Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1690571..1690842 | Replicon | chromosome |
| Accession | NZ_CP086220 | ||
| Organism | Escherichia coli strain 779 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1690609..1690712 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1690571..1690842 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMB17_RS08320 | 1687728..1689167 | + | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LMB17_RS08325 | 1689285..1689521 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LMB17_RS08330 | 1689626..1689817 | + | 192 | WP_001296140.1 | YebW family protein | - |
| LMB17_RS08335 | 1689818..1690474 | - | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| - | 1690571..1690842 | + | 272 | - | - | Antitoxin |
| - | 1690609..1690712 | - | 104 | - | - | Toxin |
| LMB17_RS08340 | 1690870..1691211 | - | 342 | WP_000976492.1 | YebY family protein | - |
| LMB17_RS08345 | 1691224..1692096 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| LMB17_RS08350 | 1692100..1692474 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| LMB17_RS08355 | 1692613..1692843 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LMB17_RS08360 | 1692945..1693601 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LMB17_RS08365 | 1693625..1694287 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T222793 NZ_CP086220:c1690712-1690609 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT222793 NZ_CP086220:1690571-1690842 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
