Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | EcnAB/- |
Location | 3908379..3908729 | Replicon | chromosome |
Accession | NZ_CP086197 | ||
Organism | Xanthomonas oryzae strain JS97-2 |
Toxin (Protein)
Gene name | EcnB | Uniprot ID | G7TLC7 |
Locus tag | LL929_RS18335 | Protein ID | WP_011257368.1 |
Coordinates | 3908379..3908513 (-) | Length | 45 a.a. |
Antitoxin (Protein)
Gene name | EcnA | Uniprot ID | G7TLC8 |
Locus tag | LL929_RS18340 | Protein ID | WP_011407410.1 |
Coordinates | 3908577..3908729 (-) | Length | 51 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LL929_RS18320 (LL929_18295) | 3905393..3906337 | - | 945 | WP_041181936.1 | MBL fold metallo-hydrolase | - |
LL929_RS18325 (LL929_18300) | 3906468..3907757 | - | 1290 | WP_011257370.1 | tryptophan--tRNA ligase | - |
LL929_RS18330 (LL929_18305) | 3907926..3908135 | - | 210 | WP_011407411.1 | CsbD family protein | - |
LL929_RS18335 (LL929_18310) | 3908379..3908513 | - | 135 | WP_011257368.1 | entericidin A/B family lipoprotein | Toxin |
LL929_RS18340 (LL929_18315) | 3908577..3908729 | - | 153 | WP_011407410.1 | entericidin A/B family lipoprotein | Antitoxin |
LL929_RS18345 (LL929_18320) | 3908837..3909760 | - | 924 | WP_011407409.1 | arginase | - |
LL929_RS18350 (LL929_18325) | 3910082..3910300 | + | 219 | Protein_3499 | hypothetical protein | - |
LL929_RS18355 (LL929_18330) | 3910292..3910756 | + | 465 | Protein_3500 | hypothetical protein | - |
LL929_RS18360 (LL929_18335) | 3910753..3911295 | + | 543 | Protein_3501 | GTPase | - |
LL929_RS18365 (LL929_18340) | 3911775..3912458 | + | 684 | WP_011257363.1 | dTMP kinase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 45 a.a. Molecular weight: 4457.33 Da Isoelectric Point: 10.2040
>T222714 WP_011257368.1 NZ_CP086197:c3908513-3908379 [Xanthomonas oryzae]
MKRAIVLLVLSMLSVGLLSGCNTVAGAGKDVKGAGEKVEDAARK
MKRAIVLLVLSMLSVGLLSGCNTVAGAGKDVKGAGEKVEDAARK
Download Length: 135 bp
>T222714 NZ_CP118048:c295995-295900 [Enterococcus faecalis]
ATGTACGAGATTGTCACAAAAATTCTTGTGCCGATTTTTGTCGGGATTGTCCTGAAACTTGTAACCATTTGGTTGGAAAA
ACAGAACGAGGAATAA
ATGTACGAGATTGTCACAAAAATTCTTGTGCCGATTTTTGTCGGGATTGTCCTGAAACTTGTAACCATTTGGTTGGAAAA
ACAGAACGAGGAATAA
Antitoxin
Download Length: 51 a.a. Molecular weight: 5046.99 Da Isoelectric Point: 8.7942
>AT222714 WP_011407410.1 NZ_CP086197:c3908729-3908577 [Xanthomonas oryzae]
MKRLLTLMVLGLFSAGVMTGCNTVAGAGKDLQGAGGKVEKTAEKCSDGKC
MKRLLTLMVLGLFSAGVMTGCNTVAGAGKDLQGAGGKVEKTAEKCSDGKC
Download Length: 153 bp
>AT222714 NZ_CP118048:295801-295865 [Enterococcus faecalis]
CTTGTGACAAAGTCGTGCATGGATGCACTAAAAAGACACCCTATTGCGGTAGGGTGTCTTTTTTT
CTTGTGACAAAGTCGTGCATGGATGCACTAAAAAGACACCCTATTGCGGTAGGGTGTCTTTTTTT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0C5UG40 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0C5V759 |