222665

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 3576912..3577657 Replicon chromosome
Accession NZ_CP086182
Organism Xanthomonas oryzae strain PXO347

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag LL921_RS16790 Protein ID WP_199285672.1
Coordinates 3576912..3577241 (+) Length 110 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag LL921_RS16795 Protein ID WP_011407754.1
Coordinates 3577238..3577657 (+) Length 140 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LL921_RS16760 (LL921_16725) 3572043..3572714 + 672 WP_011407759.1 class I SAM-dependent methyltransferase -
LL921_RS16770 (LL921_16735) 3573016..3573807 - 792 WP_011407758.1 polysaccharide deacetylase family protein -
LL921_RS16775 (LL921_16740) 3573853..3574779 + 927 WP_011257932.1 Grx4 family monothiol glutaredoxin -
LL921_RS16780 (LL921_16745) 3575111..3575446 + 336 WP_011407757.1 DarT ssDNA thymidine ADP-ribosyltransferase family protein -
LL921_RS16785 (LL921_16750) 3575490..3576809 - 1320 WP_155296575.1 IS701-like element ISXo15 family transposase -
LL921_RS16790 (LL921_16755) 3576912..3577241 + 330 WP_199285672.1 DUF4433 domain-containing protein Toxin
LL921_RS16795 (LL921_16760) 3577238..3577657 + 420 WP_011407754.1 macro domain-containing protein Antitoxin
LL921_RS16800 (LL921_16765) 3577709..3578677 + 969 WP_011258802.1 IS5-like element ISXo1 family transposase -
LL921_RS16805 (LL921_16770) 3578788..3579468 + 681 WP_011257926.1 phosphate phosphatase -
LL921_RS16810 (LL921_16775) 3579506..3580741 - 1236 WP_011257570.1 ISL3-like element ISXoo13 family transposase -
LL921_RS16815 (LL921_16780) 3581043..3581369 + 327 Protein_3219 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside IScluster/Tn - - 3575490..3580741 5251


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(3-108)

Antitoxin

Macro domain

(18-130)


Sequences

Toxin        


Download         Length: 110 a.a.        Molecular weight: 13145.86 Da        Isoelectric Point: 7.1160

>T222665 WP_199285672.1 NZ_CP086182:3576912-3577241 [Xanthomonas oryzae]
MHHVAERRWPFLFTDSHAYCQLASFYSDLSDLDKIDWPLLQARDFRRDPDDPAKFERYQAEALIHRHLPLDGLRGIVCHT
DGLKQTIERQLQERNLKLPVHTRTDWYFR

Download         Length: 330 bp

>T222665 NZ_CP117994:1914976-1915254 [Vibrio alginolyticus]
ATGATTTTATGGGAAGAAGAGTCACTTAATGATCGTGAAAAGATCTTCGAGTTTCTCTATGACTTCAACCCTGATGCGGC
AGAAAAAACTGACAACCTCATTGAAGCAAAAGTAGAAAACTTGCTTGAACAACCTTTAATGGGCGTACAACGAGATGGTA
TCCGCGGACGATTACTCATTATTCCTGAGATTTCGATGATTATCTCTTACTGGGTCGAGGGAGATATCATCCGAGTTATG
CGTGTACTCCACCAGAAACAAAAATTCCCTACGGATTGA

Antitoxin


Download         Length: 140 a.a.        Molecular weight: 15607.02 Da        Isoelectric Point: 6.4733

>AT222665 WP_011407754.1 NZ_CP086182:3577238-3577657 [Xanthomonas oryzae]
MITFTQGNLLESGAEALVNTVNTVGVMGKGIALMFKERFKENFLRYAAACKDNQVRIGKIFVTEVNELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLHRFLIENKVKSIAIPPLGAGNGGLDWAEVRPLIEEVLGNL

Download         Length: 420 bp

>AT222665 NZ_CP117994:1914695-1914979 [Vibrio alginolyticus]
ATGGACACTAGAATTCAATTTCGTGTTGATGAAGAAACAAAACGCCTAGCTCAACAAATGGCTGAGAGCCAAGGTCGCAC
TCTGAGTGACGCATGCCGTGAACTTACTGAGCAACTTGCTGAACAACAAAGAAAAACATTGTCTCACGATGCATGGCTAA
CTGAACAAGTAAATCTAGCATTTGAGAAGTTTGACTCAGGAAAGTCCGTTTTCGTTGAGCACCAAAATGCTAAATCTCGA
ATGGAAGAGCGCAAAGCCAGAATCCGTAATCGAGGTAAGCAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References