Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | pmenTA/darT(toxin) |
Location | 1007284..1008029 | Replicon | chromosome |
Accession | NZ_CP086181 | ||
Organism | Xanthomonas oryzae strain PXO349 |
Toxin (Protein)
Gene name | pmenT | Uniprot ID | - |
Locus tag | LL917_RS04870 | Protein ID | WP_199285672.1 |
Coordinates | 1007700..1008029 (-) | Length | 110 a.a. |
Antitoxin (Protein)
Gene name | pmenA | Uniprot ID | - |
Locus tag | LL917_RS04865 | Protein ID | WP_011407754.1 |
Coordinates | 1007284..1007703 (-) | Length | 140 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LL917_RS04845 (LL917_04850) | 1003573..1003899 | - | 327 | Protein_914 | hypothetical protein | - |
LL917_RS04850 (LL917_04855) | 1004201..1005436 | + | 1236 | WP_011257570.1 | ISL3-like element ISXoo13 family transposase | - |
LL917_RS04855 (LL917_04860) | 1005474..1006154 | - | 681 | WP_011257926.1 | phosphate phosphatase | - |
LL917_RS04865 (LL917_04870) | 1007284..1007703 | - | 420 | WP_011407754.1 | macro domain-containing protein | Antitoxin |
LL917_RS04870 (LL917_04875) | 1007700..1008029 | - | 330 | WP_199285672.1 | DUF4433 domain-containing protein | Toxin |
LL917_RS04875 (LL917_04880) | 1008132..1009451 | + | 1320 | WP_155296575.1 | IS701-like element ISXo15 family transposase | - |
LL917_RS04880 (LL917_04885) | 1009495..1009830 | - | 336 | WP_011407757.1 | DarT ssDNA thymidine ADP-ribosyltransferase family protein | - |
LL917_RS04885 (LL917_04890) | 1010162..1011088 | - | 927 | WP_011257932.1 | Grx4 family monothiol glutaredoxin | - |
LL917_RS04890 (LL917_04895) | 1011134..1011925 | + | 792 | WP_011407758.1 | polysaccharide deacetylase family protein | - |
LL917_RS04900 (LL917_04905) | 1012227..1012898 | - | 672 | WP_011407759.1 | class I SAM-dependent methyltransferase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | IScluster/Tn | - | - | 1004201..1009451 | 5250 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 110 a.a. Molecular weight: 13145.86 Da Isoelectric Point: 7.1160
>T222659 WP_199285672.1 NZ_CP086181:c1008029-1007700 [Xanthomonas oryzae]
MHHVAERRWPFLFTDSHAYCQLASFYSDLSDLDKIDWPLLQARDFRRDPDDPAKFERYQAEALIHRHLPLDGLRGIVCHT
DGLKQTIERQLQERNLKLPVHTRTDWYFR
MHHVAERRWPFLFTDSHAYCQLASFYSDLSDLDKIDWPLLQARDFRRDPDDPAKFERYQAEALIHRHLPLDGLRGIVCHT
DGLKQTIERQLQERNLKLPVHTRTDWYFR
Download Length: 330 bp
>T222659 NZ_CP117993:3366876-3367094 [Enterobacter hormaechei]
ATGTCTGATAAACCATTAACAAAAGTCGATTATTTGATGCGCCTGCGACGCTGCCAGTCAATTGACACCCTTGAACGAGT
TATTGAGAAAAATAAATACGAGCTGTCTGATAATGAACTGGCGGTATTTTATTCAGCTGCCGACCATCGTCTTGCTGAGC
TGACCATGAATAAACTGTATGACAAGATCCCCTCTTCGGTGTGGAAATTTGTTCGTTAA
ATGTCTGATAAACCATTAACAAAAGTCGATTATTTGATGCGCCTGCGACGCTGCCAGTCAATTGACACCCTTGAACGAGT
TATTGAGAAAAATAAATACGAGCTGTCTGATAATGAACTGGCGGTATTTTATTCAGCTGCCGACCATCGTCTTGCTGAGC
TGACCATGAATAAACTGTATGACAAGATCCCCTCTTCGGTGTGGAAATTTGTTCGTTAA
Antitoxin
Download Length: 140 a.a. Molecular weight: 15607.02 Da Isoelectric Point: 6.4733
>AT222659 WP_011407754.1 NZ_CP086181:c1007703-1007284 [Xanthomonas oryzae]
MITFTQGNLLESGAEALVNTVNTVGVMGKGIALMFKERFKENFLRYAAACKDNQVRIGKIFVTEVNELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLHRFLIENKVKSIAIPPLGAGNGGLDWAEVRPLIEEVLGNL
MITFTQGNLLESGAEALVNTVNTVGVMGKGIALMFKERFKENFLRYAAACKDNQVRIGKIFVTEVNELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLHRFLIENKVKSIAIPPLGAGNGGLDWAEVRPLIEEVLGNL
Download Length: 420 bp
>AT222659 NZ_CP117993:3366474-3366848 [Enterobacter hormaechei]
ATGGACGAGTACTCGCCAAAAAGGCATGATATCGCGCAGTTGAAATTTCTCTGCGAATCCTTGTACCATGACTGCCTTGC
CAATCTTGAAGAAAGTAACCATGGCTGGGTGAACGATCCAACGTCTGCTATCAATTTACAGCTCAACGAGCTGATCGAGC
ATATCGCCACCTTCGCACTTAATTATAAAATTAAGTACAATGAAGATAATAAGTTGATAGAGCAAATTGATGAATACCTG
GACGACACCTTTATGTTGTTCAGCAGCTACGGCATTAACGCACAGGATTTGCAGAAATGGCGTAAATCAGGAAACCGTCT
ATTTCGCTGCTTCACTAATGTCAGCAGAGCTAATCCGGTTAGTCTTTCCTGTTAA
ATGGACGAGTACTCGCCAAAAAGGCATGATATCGCGCAGTTGAAATTTCTCTGCGAATCCTTGTACCATGACTGCCTTGC
CAATCTTGAAGAAAGTAACCATGGCTGGGTGAACGATCCAACGTCTGCTATCAATTTACAGCTCAACGAGCTGATCGAGC
ATATCGCCACCTTCGCACTTAATTATAAAATTAAGTACAATGAAGATAATAAGTTGATAGAGCAAATTGATGAATACCTG
GACGACACCTTTATGTTGTTCAGCAGCTACGGCATTAACGCACAGGATTTGCAGAAATGGCGTAAATCAGGAAACCGTCT
ATTTCGCTGCTTCACTAATGTCAGCAGAGCTAATCCGGTTAGTCTTTCCTGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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