Detailed information of TA system TA222650

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/RelE-Phd
• Location: 3241517..3242042
• Replicon: chromosome
• Accession: NZ_CP086179
• Organism: Streptomyces fungicidicus strain F1

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: LLI13_RS14440
• Protein ID: WP_121546319.1
• Coordinates: 3241776..3242042 (+)
• Length: 89 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: A0A7H8J816
• Locus tag: LLI13_RS14435
• Protein ID: WP_040908670.1
• Coordinates: 3241517..3241783 (+)
• Length: 89 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
LLI13_RS14405	3236981..3237742	+	762	WP_121546315.1	cobalt ECF transporter T component CbiQ	-
LLI13_RS14410	3237730..3238500	+	771	WP_121546316.1	ABC transporter ATP-binding protein	-
LLI13_RS14415	3238512..3238982	+	471	WP_004930328.1	MarR family transcriptional regulator	-
LLI13_RS14420	3239040..3240260	+	1221	WP_121546317.1	serine hydrolase domain-containing protein	-
LLI13_RS14425	3240261..3240536	-	276	WP_121546318.1	DUF1876 domain-containing protein	-
LLI13_RS14430	3240617..3241462	-	846	WP_004930321.1	DMT family transporter	-
LLI13_RS14435	3241517..3241783	+	267	WP_040908670.1	type II toxin-antitoxin system Phd/YefM family antitoxin	Antitoxin
LLI13_RS14440	3241776..3242042	+	267	WP_121546319.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
LLI13_RS14445	3242149..3244356	-	2208	WP_121546320.1	MMPL family transporter	-
LLI13_RS14450	3244457..3245056	-	600	WP_004930314.1	TetR/AcrR family transcriptional regulator	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (9-86)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (6-57)

Sequences

Toxin

Protein

• Length: 89 a.a.
• Molecular weight: 10199.72 Da
• Isoelectric Point: 10.2960

>T222650 WP_121546319.1 NZ_CP086179:3241776-3242042 [Streptomyces fungicidicus]
VSSGYRTVFRPEAQAELRKIPRDMALRILVKLTELETDPLGFRTTALVSRPDRRRLRVGDYRVIYTIDNGELTVWVVHVG
HRSTVYDT

Nucleotide

• Length: 267 bp

>T222650 NZ_CP117988:c1533373-1533083 [Vibrio campbellii]
ATGACCTATAAACTCGACTTTAAAAAGAGCGCACTCAAAGAGTGGAAAAAGCTTGGCTCTACTCTGCAACAACAATTTAA
GAAAAAGCTAATCGAGCGCTTAGATAATCCACATGTTCCAGCGTCAAAACTTTCTGGAGCTGACAACATGTATAAAATTA
AGTTGCGTCAGTCGGGCTACCGTCTCGTCTACAAAGTCGAAGACGATGTCATCATTGTAACCGTCTTAGCAGTCGGAAAA
CGAGAACGTAGCAATGTTTACCGTAAAGCCATGAAAAGGTTAGATGATTGA

Antitoxin

Protein

• Length: 89 a.a.
• Molecular weight: 10218.61 Da
• Isoelectric Point: 4.5329

>AT222650 WP_040908670.1 NZ_CP086179:3241517-3241783 [Streptomyces fungicidicus]
MTEMPIESIRDVRAHLAEVVERADRDDTPTVITRRGKQVAAVVSMEVLRKYQEWEEREINRIIDERMANPAAGIPIEDVM
RETLERGE

Nucleotide

• Length: 267 bp

>AT222650 NZ_CP117988:c1533611-1533363 [Vibrio campbellii]
ATGACCACTAGAATTTTAGCTGATGTTGCTGCAAGCATTACCGAGTTGAAAGCTAACCCTATGAAAGTTGCAACTAGTGC
TTATGGCGAACCTGTTGCTGTATTAAACCGAAATGAGCCAGCATTTTATTGCGTACCTGCCGAAGCGTACGAAATGATGA
TGGACAGACTCGAAGATCTTGAACTACTAGCTATCGCTAAAGAGCGTGAATCTGAAGAGAGCATTTCGGTAAATATTGAT
GACCTATAA

Structures

Antitoxin

• AlphaFold DB: A0A7H8J816