Detailed information of TA system TA222649

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): phd-doc/Fic(toxin)
• Location: 2965711..2966276
• Replicon: chromosome
• Accession: NZ_CP086179
• Organism: Streptomyces fungicidicus strain F1

Toxin (Protein)

• Gene name: doc
• Uniprot ID: -
• Locus tag: LLI13_RS13300
• Protein ID: WP_121546168.1
• Coordinates: 2965711..2966079 (-)
• Length: 123 a.a.

Antitoxin (Protein)

• Gene name: phd
• Uniprot ID: -
• Locus tag: LLI13_RS13305
• Protein ID: WP_121546169.1
• Coordinates: 2966079..2966276 (-)
• Length: 66 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
LLI13_RS13280	2960787..2961764	+	978	WP_121546166.1	glycine betaine ABC transporter substrate-binding protein	-
LLI13_RS13285	2961761..2962552	-	792	WP_121546167.1	S16 family serine protease	-
LLI13_RS13290	2962861..2963502	-	642	WP_040907076.1	helix-turn-helix domain-containing protein	-
LLI13_RS13295	2963787..2965586	-	1800	WP_004930870.1	DEAD/DEAH box helicase	-
LLI13_RS13300	2965711..2966079	-	369	WP_121546168.1	Fic family protein	Toxin
LLI13_RS13305	2966079..2966276	-	198	WP_121546169.1	hypothetical protein	Antitoxin
LLI13_RS13310	2966309..2967769	-	1461	WP_121546170.1	MFS transporter	-
LLI13_RS13320	2968111..2969334	+	1224	WP_228312966.1	hypothetical protein	-
LLI13_RS13325	2969351..2970529	-	1179	WP_121546172.1	SUKH-4 family immunity protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Fido domain (4-80)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 123 a.a.
• Molecular weight: 13745.67 Da
• Isoelectric Point: 4.6413

>T222649 WP_121546168.1 NZ_CP086179:c2966079-2965711 [Streptomyces fungicidicus]
MYYLTLPELLNLAKRLGEDVVRDYGLLDSALARPQSSVFGQDAYPDVWQKAAALMESLARNHALVDGNKRLAWYATWVFL
HMNGHPLDPDFDVDEAEQFVLDVCQGALDVPKIAAQLPRFAR

Nucleotide

• Length: 369 bp

>T222649 NZ_CP117988:c1532659-1532369 [Vibrio campbellii]
ATGACCTATAAACTCGACTTTAAAAAGAGCGCACTCAAAGAGTGGAAAAAGCTTGGCTCTACTCTGCAACAACAATTTAA
GAAAAAGCTAATCGAGCGCTTAGATAATCCACATGTTCCAGCGTCAAAACTTTCTGGAGCTGACAACATGTATAAAATTA
AGTTGCGTCAGTCGGGCTACCGTCTCGTCTACAAAGTCGAAGACGATGTCATCATTGTAACCGTCTTAGCAGTCGGAAAA
CGAGAACGTAGCAATGTTTACCGTAAAGCCATGAAAAGGTTAGATGATTGA

Antitoxin

Protein

• Length: 66 a.a.
• Molecular weight: 7349.21 Da
• Isoelectric Point: 5.5900

>AT222649 WP_121546169.1 NZ_CP086179:c2966276-2966079 [Streptomyces fungicidicus]
MAGLNLRFTDEELDALRERAAAEGRSMQTFAHDAVIKAINEHSRLFNEAADHVLRASEELNRRLA

Nucleotide

• Length: 198 bp

>AT222649 NZ_CP117988:c1532897-1532649 [Vibrio campbellii]
ATGACCACTAGAATTTTAGCTGATGTTGCTGCAAGCATTACCGAGTTGAAAGCTAACCCTATGAAAGTTGCAACTAGTGC
TTATGGCGAACCTGTTGCTGTATTAAACCGAAATGAGCCAGCATTTTATTGCGTACCTGCCGAAGCGTACGAAATGATGA
TGGACAGACTCGAAGATCTTGAACTACTAGCTATCGCTAAAGAGCGTGAATCTGAAGAGAGCATTTCGGTAAATATTGAT
GACCTATAA