Detailed information of TA system TA222633

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): phd-doc/Fic(toxin)
• Location: 2965714..2966279
• Replicon: chromosome
• Accession: NZ_CP086175
• Organism: Streptomyces fungicidicus strain F9

Toxin (Protein)

• Gene name: doc
• Uniprot ID: -
• Locus tag: LL042_RS13300
• Protein ID: WP_121546168.1
• Coordinates: 2965714..2966082 (-)
• Length: 123 a.a.

Antitoxin (Protein)

• Gene name: phd
• Uniprot ID: -
• Locus tag: LL042_RS13305
• Protein ID: WP_121546169.1
• Coordinates: 2966082..2966279 (-)
• Length: 66 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
LL042_RS13280	2960790..2961767	+	978	WP_121546166.1	glycine betaine ABC transporter substrate-binding protein	-
LL042_RS13285	2961764..2962555	-	792	WP_121546167.1	S16 family serine protease	-
LL042_RS13290	2962864..2963505	-	642	WP_040907076.1	helix-turn-helix domain-containing protein	-
LL042_RS13295	2963790..2965589	-	1800	WP_004930870.1	DEAD/DEAH box helicase	-
LL042_RS13300	2965714..2966082	-	369	WP_121546168.1	Fic family protein	Toxin
LL042_RS13305	2966082..2966279	-	198	WP_121546169.1	hypothetical protein	Antitoxin
LL042_RS13310	2966312..2967772	-	1461	WP_121546170.1	MFS transporter	-
LL042_RS13320	2968114..2969337	+	1224	WP_228312966.1	hypothetical protein	-
LL042_RS13325	2969354..2970532	-	1179	WP_121546172.1	SUKH-4 family immunity protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Fido domain (4-80)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 123 a.a.
• Molecular weight: 13745.67 Da
• Isoelectric Point: 4.6413

>T222633 WP_121546168.1 NZ_CP086175:c2966082-2965714 [Streptomyces fungicidicus]
MYYLTLPELLNLAKRLGEDVVRDYGLLDSALARPQSSVFGQDAYPDVWQKAAALMESLARNHALVDGNKRLAWYATWVFL
HMNGHPLDPDFDVDEAEQFVLDVCQGALDVPKIAAQLPRFAR

Nucleotide

• Length: 369 bp

>T222633 NZ_CP117976:c2509786-2509556 [Salmonella enterica]
ATGAAGGTGTATGGCAGCAATCTCGGAGAACCTCACACCAGCGCCTTTGGTGATGGGCTTTTTGAGCTTCGGATTAAAGG
TAGCGATGGCATCGCTCGCGTTTTTTACTGCACCCTGGCAGGGAAGCGCATCGTCATGCTGCACAGCTTTATAAAGAAGA
CGCAGAAAACCCCTGTAGCTGAACGCAAAAAGGCAGAAACCAGAATGAAGGAGGTTAAGCATGACTGGTAA

Antitoxin

Protein

• Length: 66 a.a.
• Molecular weight: 7349.21 Da
• Isoelectric Point: 5.5900

>AT222633 WP_121546169.1 NZ_CP086175:c2966279-2966082 [Streptomyces fungicidicus]
MAGLNLRFTDEELDALRERAAAEGRSMQTFAHDAVIKAINEHSRLFNEAADHVLRASEELNRRLA

Nucleotide

• Length: 198 bp

>AT222633 NZ_CP117976:c2509566-2509258 [Salmonella enterica]
ATGACTGGTAAACGTAATGCGCCAACTATAACGCACGATGAAATGGCCGCTAAATGGATGGAAGACCCAGCGTTCAAAGC
TGAATATGACGCCATTGCTGATGAGTTCGCGTTGCTTGACGAAATGCTGGCCGCACGTAAAGAAGCAGGTCTCACCCAGG
CTGAAGTTGCTGAACGGATGGGAACAAAAGCCACTGCTATAACCAGAATGGAAAGCAACCTTGCTGCTGGCGTCAGCGGA
CCATCTTTTACTACGCTGAAAAAGTTCGCACAGGCAACCGGGAAAAAACTCCAGATCCGCTTCGTGTAA