Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE(toxin) |
| Location | 3832034..3832613 | Replicon | chromosome |
| Accession | NZ_CP086111 | ||
| Organism | Skermanella rosea strain KEMB 2255-458 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | JL101_RS17895 | Protein ID | WP_203097135.1 |
| Coordinates | 3832034..3832291 (+) | Length | 86 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | JL101_RS17900 | Protein ID | WP_203097134.1 |
| Coordinates | 3832284..3832613 (+) | Length | 110 a.a. |
Genomic Context
Location: 3827220..3828176 (957 bp)
Type: Others
Protein ID: WP_203097138.1
Type: Others
Protein ID: WP_203097138.1
Location: 3828190..3828996 (807 bp)
Type: Others
Protein ID: WP_203097137.1
Type: Others
Protein ID: WP_203097137.1
Location: 3828993..3831065 (2073 bp)
Type: Others
Protein ID: WP_228434928.1
Type: Others
Protein ID: WP_228434928.1
Location: 3831062..3831916 (855 bp)
Type: Others
Protein ID: WP_203097136.1
Type: Others
Protein ID: WP_203097136.1
Location: 3832034..3832291 (258 bp)
Type: Toxin
Protein ID: WP_203097135.1
Type: Toxin
Protein ID: WP_203097135.1
Location: 3832284..3832613 (330 bp)
Type: Antitoxin
Protein ID: WP_203097134.1
Type: Antitoxin
Protein ID: WP_203097134.1
Location: 3832754..3833284 (531 bp)
Type: Others
Protein ID: WP_203097133.1
Type: Others
Protein ID: WP_203097133.1
Location: 3833314..3833592 (279 bp)
Type: Others
Protein ID: WP_203097132.1
Type: Others
Protein ID: WP_203097132.1
Location: 3833613..3833819 (207 bp)
Type: Others
Protein ID: WP_192499005.1
Type: Others
Protein ID: WP_192499005.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JL101_RS17875 (JL101_017915) | 3827220..3828176 | + | 957 | WP_203097138.1 | ABC transporter permease | - |
| JL101_RS17880 (JL101_017920) | 3828190..3828996 | + | 807 | WP_203097137.1 | ABC transporter permease | - |
| JL101_RS17885 (JL101_017925) | 3828993..3831065 | + | 2073 | WP_228434928.1 | ABC transporter ATP-binding protein | - |
| JL101_RS17890 (JL101_017930) | 3831062..3831916 | + | 855 | WP_203097136.1 | PhnD/SsuA/transferrin family substrate-binding protein | - |
| JL101_RS17895 (JL101_017935) | 3832034..3832291 | + | 258 | WP_203097135.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| JL101_RS17900 (JL101_017940) | 3832284..3832613 | + | 330 | WP_203097134.1 | helix-turn-helix transcriptional regulator | Antitoxin |
| JL101_RS17905 (JL101_017945) | 3832754..3833284 | - | 531 | WP_203097133.1 | hypothetical protein | - |
| JL101_RS17910 (JL101_017950) | 3833314..3833592 | - | 279 | WP_203097132.1 | DUF2934 domain-containing protein | - |
| JL101_RS17915 (JL101_017955) | 3833613..3833819 | - | 207 | WP_192499005.1 | DUF2795 domain-containing protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 86 a.a. Molecular weight: 9625.10 Da Isoelectric Point: 10.4249
>T222539 WP_203097135.1 NZ_CP086111:3832034-3832291 [Skermanella rosea]
MQIQYEAQAAKSLRKLPANVRNRIRSKIEQYAQDPTSLANNVIQLTNSDLFRLRVGDHRVIFAIESGIVTIMVVIDVRPR
GAAYD
MQIQYEAQAAKSLRKLPANVRNRIRSKIEQYAQDPTSLANNVIQLTNSDLFRLRVGDHRVIFAIESGIVTIMVVIDVRPR
GAAYD
Download Length: 258 bp
>T222539 NZ_CP117960:1386264-1386482 [Escherichia coli]
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACCATGAATAAACTGTACGACAAGATCCCTTCCTCAGTTTGGAAATTTATTCGCTAA
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACCATGAATAAACTGTACGACAAGATCCCTTCCTCAGTTTGGAAATTTATTCGCTAA
Antitoxin
Download Length: 110 a.a. Molecular weight: 12152.74 Da Isoelectric Point: 4.5749
>AT222539 WP_203097134.1 NZ_CP086111:3832284-3832613 [Skermanella rosea]
MTDTITIPRAEYDALRTRLEDLEDVLAAQTARTGITLPAEFANRIMDGENPIRVWREYRGLGLRELAIRSGLAAGFLSEI
ENGKRVGSIATYRALARSLDTSLDWLADE
MTDTITIPRAEYDALRTRLEDLEDVLAAQTARTGITLPAEFANRIMDGENPIRVWREYRGLGLRELAIRSGLAAGFLSEI
ENGKRVGSIATYRALARSLDTSLDWLADE
Download Length: 330 bp
>AT222539 NZ_CP117960:1385864-1386238 [Escherichia coli]
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGCCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTAAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGTAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGCCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTAAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGTAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG