Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2831966..2832116 | Replicon | chromosome |
| Accession | NZ_CP086101 | ||
| Organism | Enterobacter ludwigii strain 994590 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2831978..2832081 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2831966..2832116 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL022_RS13465 (LL022_13500) | 2827816..2828055 | + | 240 | WP_020883412.1 | YebV family protein | - |
| LL022_RS13470 (LL022_13505) | 2828090..2828734 | - | 645 | WP_181240779.1 | protein-serine/threonine phosphatase | - |
| LL022_RS13475 (LL022_13510) | 2828902..2829843 | + | 942 | WP_014170619.1 | VirK/YbjX family protein | - |
| LL022_RS13480 (LL022_13515) | 2830664..2831530 | + | 867 | WP_041162981.1 | benzoate transporter | - |
| - | 2831966..2832116 | + | 151 | - | - | Antitoxin |
| - | 2831978..2832081 | - | 104 | - | - | Toxin |
| LL022_RS13485 (LL022_13520) | 2832220..2832558 | - | 339 | WP_014170622.1 | YebY family protein | - |
| LL022_RS13490 (LL022_13525) | 2832575..2833444 | - | 870 | WP_040017778.1 | copper homeostasis membrane protein CopD | - |
| LL022_RS13495 (LL022_13530) | 2833446..2833817 | - | 372 | WP_020883407.1 | CopC domain-containing protein YobA | - |
| LL022_RS13500 (LL022_13535) | 2833955..2834185 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| LL022_RS13505 (LL022_13540) | 2834295..2834945 | + | 651 | WP_020883406.1 | carbon-nitrogen hydrolase family protein | - |
| LL022_RS13510 (LL022_13545) | 2834970..2835632 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T222506 NZ_CP086101:c2832081-2831978 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT222506 NZ_CP086101:2831966-2832116 [Enterobacter ludwigii]
TTTATAATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TTTATAATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
