Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2242729..2242879 | Replicon | chromosome |
| Accession | NZ_CP086099 | ||
| Organism | Enterobacter ludwigii strain 197 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2242764..2242867 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2242729..2242879 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL023_RS10660 (LL023_10680) | 2239213..2239875 | - | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
| LL023_RS10665 (LL023_10685) | 2239900..2240550 | - | 651 | WP_020883406.1 | carbon-nitrogen hydrolase family protein | - |
| LL023_RS10670 (LL023_10690) | 2240660..2240890 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| LL023_RS10675 (LL023_10695) | 2241028..2241399 | + | 372 | WP_020883407.1 | CopC domain-containing protein YobA | - |
| LL023_RS10680 (LL023_10700) | 2241401..2242270 | + | 870 | WP_040017778.1 | copper homeostasis membrane protein CopD | - |
| LL023_RS10685 (LL023_10705) | 2242287..2242625 | + | 339 | WP_014170622.1 | YebY family protein | - |
| - | 2242729..2242879 | - | 151 | - | - | Antitoxin |
| - | 2242764..2242867 | + | 104 | - | - | Toxin |
| LL023_RS10690 (LL023_10710) | 2243315..2244181 | - | 867 | WP_041162981.1 | benzoate transporter | - |
| LL023_RS10695 (LL023_10715) | 2245002..2245943 | - | 942 | WP_014170619.1 | VirK/YbjX family protein | - |
| LL023_RS10700 (LL023_10720) | 2246111..2246755 | + | 645 | WP_181240779.1 | protein-serine/threonine phosphatase | - |
| LL023_RS10705 (LL023_10725) | 2246790..2247029 | - | 240 | WP_020883412.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T222483 NZ_CP086099:2242764-2242867 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT222483 NZ_CP086099:c2242879-2242729 [Enterobacter ludwigii]
TTTATAATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TTTATAATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
