Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) mazEF/MazF(toxin)
Location 508841..509477 Replicon chromosome
Accession NZ_CP086007
Organism Bacillus subtilis subsp. natto strain SCP010-1

Toxin (Protein)


Gene name mazF Uniprot ID G4NU33
Locus tag LJC78_RS02615 Protein ID WP_003156187.1
Coordinates 509127..509477 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID G4NU32
Locus tag LJC78_RS02610 Protein ID WP_003225183.1
Coordinates 508841..509122 (+) Length 94 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LJC78_RS02590 (LJC78_02590) 505200..505799 - 600 WP_014478896.1 rhomboid family intramembrane serine protease -
LJC78_RS02595 (LJC78_02595) 505894..506259 + 366 WP_014478897.1 holo-ACP synthase -
LJC78_RS02600 (LJC78_02600) 506425..507441 + 1017 WP_003234282.1 outer membrane lipoprotein carrier protein LolA -
LJC78_RS02605 (LJC78_02605) 507556..508725 + 1170 WP_014478898.1 alanine racemase -
LJC78_RS02610 (LJC78_02610) 508841..509122 + 282 WP_003225183.1 type II toxin-antitoxin system antitoxin EndoAI Antitoxin
LJC78_RS02615 (LJC78_02615) 509127..509477 + 351 WP_003156187.1 type II toxin-antitoxin system endoribonuclease NdoA Toxin
LJC78_RS02620 (LJC78_02620) 509593..510417 + 825 WP_009966610.1 RsbT co-antagonist protein RsbRA -
LJC78_RS02625 (LJC78_02625) 510422..510787 + 366 WP_003225190.1 RsbT antagonist protein RsbS -
LJC78_RS02630 (LJC78_02630) 510791..511192 + 402 WP_014478899.1 serine/threonine-protein kinase RsbT -
LJC78_RS02635 (LJC78_02635) 511204..512211 + 1008 WP_014478900.1 phosphoserine phosphatase RsbU -
LJC78_RS02640 (LJC78_02640) 512280..512609 + 330 WP_003234298.1 anti-sigma factor antagonist RsbV -
LJC78_RS02645 (LJC78_02645) 512606..513088 + 483 WP_003234299.1 anti-sigma B factor RsbW -
LJC78_RS02650 (LJC78_02650) 513054..513842 + 789 WP_003246715.1 RNA polymerase sigma factor SigB -
LJC78_RS02655 (LJC78_02655) 513842..514441 + 600 WP_003246608.1 phosphoserine phosphatase RsbX -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(4-111)

Antitoxin

Ribbon-helix-helix protein, CopG

(12-45)


Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 12977.98 Da        Isoelectric Point: 4.8781

>T222429 WP_003156187.1 NZ_CP086007:509127-509477 [Bacillus subtilis subsp. natto]
MIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTAIVAAITAQIQKAKLPTHVEIDAKRYGFERDSVILLEQI
RTIDKQRLTDKITHLDDEMMDKVDEALQISLALIDF

Download         Length: 351 bp

>T222429 NZ_CP117852:c1202712-1201387 [Salmonella enterica subsp. enterica serovar Mbandaka]
ATGAGCCGGAAACAGCAACGTCTGGTAATTTGGATGAACGGCATCAAAGTCGGGTACTGGGAAAAAAGCAAAGGGGTAGA
CAGCTTAGAATACCTTCCTGAATGGGTTGCTGACGAACAGGGAAGGCCGCTGTCATTGTCCCTTCCTTTTACTCCCGGGA
ACCAGGTCTGGCGTGGAAATGTGGTACGTGACTATTTTGATAATTTACTGCCGGACAGCGAAGGCATACGCAGACGTCTG
GCAATGCGTTACAAGGCCGATAGCCTGGAGCCTTTTGATCTGCTGACGGAGCTGGGAAAAGACTGCGTGGGCGCGATACA
GCTGCTTCATGACGGAGATGAACCCACTGATTTATATTCCGTGAAGTATCACCCGCTTACTGAATCAGAAATTGCGGCAA
CTTTGCGTAATACCACGGAGACATTGCTACCGGGCAGGCCAGAAGATAACGACGACTTACGTTTATCTATTGCCGGTGCT
CAGGAGAAAACAGCCCTACTGTGGCATGAAGATCGGTGGTGTATGCCGGAGGGTAATACACCAACGACGCATATATTCAA
GCTACCGCTCGGACTTGTGGGGAACATGAAAGCCGACATGAGCTCGTCGGTTGAAAATGAATGGCTCTGCTCGGTACTTC
TCGGCCAGTACGGGCTCCCCGTGGCAAGAACGCAGATTGCTCACTTTGAAGATCAGAAAGCGCTGGTGGTAGAACGTTTT
GACCGAAAATGGTCAGGAGACGGACAATGGATCATTCGTTTACCCCAGGAGGATATGTGTCAGGCCCTGGGCGTTTCGCC
ATTACGAAAATATCAGGCGGACGGCGGGCCAGGTATATCGGAAATTATGGAGGTTCTGAGTAATTCAGACCGTGCTGAGC
GTGACAAAGCGCAGTTTTTTATGACGCAGATAATTTTCTGGATGATGGCCGCAACAGATGGCCACGCTAAAAATTTCAGT
ATTTCTATTGGGCCACAGGGACGTTATCACCTTACACCAAACTATGATGTGTTGTCGGCATGGCCGGTGATCGGTCATGG
GAACAATCAGATATCCTGGCAGAAGTGCAAACTGGCGATGGCCGTACGTGGCAGTAGCAACTATTACCAGATATATCGAA
TACAACGACGCCACTGGATCAGGCATGGTGAGATAACCGGCCTGAGTAAACAGCAGACAGAGGCGATGATAGAGGAAATC
ATCGCCAGAACCCCGGGTGTCATTGAACGTGTTAGCGGGCTTCTTCCGGACCAGTTCCCCCAGCAGCTTGCGGAAAGTAT
TTTTGATGGAATGAGGCAGCAATGCAGGCGCCTGGCTGAGAAATGA

Antitoxin


Download         Length: 94 a.a.        Molecular weight: 10546.92 Da        Isoelectric Point: 6.4708

>AT222429 WP_003225183.1 NZ_CP086007:508841-509122 [Bacillus subtilis subsp. natto]
MSESSARTEMKISLPENLVAELDGVAMREKRSRNELISQAVRAYVSERTTRHNRDLMRRGYMEMAKINLNISSEAHFAEC
EAETTVERLVSGG

Download         Length: 282 bp

>AT222429 NZ_CP117852:c1203010-1202717 [Salmonella enterica subsp. enterica serovar Mbandaka]
ATCAATAATGATTACCCGTTAAACACGCTCAACCAGCTGCGTCCCTTGCTCATTGGTTTTCGCAAGGCGAATGGCCTGAC
GCAAAAAGACCTGTCCGAAAGGTTAGGCGTCACTCAACAGACATACTCACGTCTGGAAGCCAACCCTGCCAGTGCGAGCA
TTGAACGGCTATTCAAGGTGTTTTCCATCCTGGGCGTAAAAATCAGCTTCTCCTCGGCAACCACCTCTTCAGAGAGGAAG
CAGACGGAAGAAATGCTTAAATCAAACTCACCTGCACGACAGGAGGATTGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4MDX
PDB 4ME7
PDB 1NE8

Antitoxin

Source ID Structure
PDB 4ME7
AlphaFold DB G4NU32

References