Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-RHH |
| Location | 2211936..2212480 | Replicon | chromosome |
| Accession | NC_009565 | ||
| Organism | Mycobacterium tuberculosis F11 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | G0TLU9 |
| Locus tag | TBFG_RS10300 | Protein ID | WP_003409896.1 |
| Coordinates | 2211936..2212232 (-) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | P67299 |
| Locus tag | TBFG_RS10305 | Protein ID | WP_003409899.1 |
| Coordinates | 2212229..2212480 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TBFG_RS10245 | 2206969..2207319 | - | 351 | WP_003899096.1 | hypothetical protein | - |
| TBFG_RS10250 | 2207330..2208232 | - | 903 | WP_003899097.1 | hypothetical protein | - |
| TBFG_RS10255 | 2208253..2208444 | - | 192 | WP_003409876.1 | hypothetical protein | - |
| TBFG_RS10260 | 2208445..2208741 | - | 297 | WP_003409877.1 | hypothetical protein | - |
| TBFG_RS10265 | 2208981..2209196 | + | 216 | WP_003409878.1 | antitoxin | - |
| TBFG_RS10270 | 2209193..2209504 | + | 312 | WP_003409881.1 | type II toxin-antitoxin system VapC family toxin | - |
| TBFG_RS22460 | 2209478..2209999 | - | 522 | WP_003904745.1 | hypothetical protein | - |
| TBFG_RS10280 | 2209974..2210351 | + | 378 | WP_010886136.1 | type II toxin-antitoxin system toxin HigB | - |
| TBFG_RS10285 | 2210393..2210842 | + | 450 | WP_003409886.1 | type II toxin-antitoxin system antitoxin HigA | - |
| TBFG_RS10290 | 2210839..2211384 | + | 546 | WP_003409891.1 | SecB-like chaperone | - |
| TBFG_RS10295 | 2211273..2211887 | - | 615 | WP_003901296.1 | hypothetical protein | - |
| TBFG_RS10300 | 2211936..2212232 | - | 297 | WP_003409896.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| TBFG_RS10305 | 2212229..2212480 | - | 252 | WP_003409899.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
| TBFG_RS10310 | 2212467..2212961 | + | 495 | WP_003899099.1 | hypothetical protein | - |
| TBFG_RS10315 | 2213121..2213528 | - | 408 | WP_003409913.1 | type II toxin-antitoxin system VapC family toxin | - |
| TBFG_RS10320 | 2213532..2213804 | - | 273 | WP_003899100.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| TBFG_RS10325 | 2213837..2215057 | - | 1221 | WP_003409919.1 | TetR family transcriptional regulator Mce3R | - |
| TBFG_RS10335 | 2215956..2216751 | + | 796 | Protein_2024 | ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11268.64 Da Isoelectric Point: 6.8604
>T22226 WP_003409896.1 NC_009565:c2212232-2211936 [Mycobacterium tuberculosis F11]
VSSRYLLSPAAQAHLEEIWDCTYDRWGVDQAEQYLRELQHAIDRAAANPRIGRACDEIRPGYRKLSAGSHTLFYRVTGEG
TIDVVRVLHQRMDVDRNL
VSSRYLLSPAAQAHLEEIWDCTYDRWGVDQAEQYLRELQHAIDRAAANPRIGRACDEIRPGYRKLSAGSHTLFYRVTGEG
TIDVVRVLHQRMDVDRNL
Download Length: 297 bp
>T22226 NC_009565:c2212232-2211936 [Mycobacterium tuberculosis F11]
GTGAGTAGCCGATACCTTCTCTCGCCTGCCGCGCAGGCACATCTGGAAGAGATCTGGGACTGCACCTATGACCGTTGGGG
TGTCGATCAGGCCGAGCAGTACCTGCGCGAACTTCAACACGCTATCGACCGTGCTGCGGCAAACCCGCGGATCGGACGAG
CGTGCGACGAGATTCGCCCCGGCTATCGCAAGCTCTCGGCCGGGTCACACACGTTGTTCTATCGGGTGACTGGCGAAGGC
ACCATCGACGTCGTGCGAGTCCTGCACCAACGGATGGACGTCGACCGGAACCTCTGA
GTGAGTAGCCGATACCTTCTCTCGCCTGCCGCGCAGGCACATCTGGAAGAGATCTGGGACTGCACCTATGACCGTTGGGG
TGTCGATCAGGCCGAGCAGTACCTGCGCGAACTTCAACACGCTATCGACCGTGCTGCGGCAAACCCGCGGATCGGACGAG
CGTGCGACGAGATTCGCCCCGGCTATCGCAAGCTCTCGGCCGGGTCACACACGTTGTTCTATCGGGTGACTGGCGAAGGC
ACCATCGACGTCGTGCGAGTCCTGCACCAACGGATGGACGTCGACCGGAACCTCTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9207.17 Da Isoelectric Point: 7.0150
>AT22226 WP_003409899.1 NC_009565:c2212480-2212229 [Mycobacterium tuberculosis F11]
VGKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRETQLRALREALEAGERSGSSTPFDFDGFLGRKRADAS
RGR
VGKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRETQLRALREALEAGERSGSSTPFDFDGFLGRKRADAS
RGR
Download Length: 252 bp
>AT22226 NC_009565:c2212480-2212229 [Mycobacterium tuberculosis F11]
GTGGGTAAGAACACGTCCTTCGTCCTCGACGAGCACTACAGCGCCTTCATCGACGGCGAGATCGCCGCGGGCCGCTACCG
GTCGGCCAGTGAAGTCATCCGCTCCGCGTTGCGACTGCTCGAGGACCGTGAAACCCAGCTGCGCGCGCTTCGTGAGGCTC
TCGAGGCCGGCGAACGCAGCGGCAGCTCGACACCGTTCGACTTCGACGGATTCCTCGGTCGTAAGCGGGCTGACGCCTCG
CGTGGCCGGTGA
GTGGGTAAGAACACGTCCTTCGTCCTCGACGAGCACTACAGCGCCTTCATCGACGGCGAGATCGCCGCGGGCCGCTACCG
GTCGGCCAGTGAAGTCATCCGCTCCGCGTTGCGACTGCTCGAGGACCGTGAAACCCAGCTGCGCGCGCTTCGTGAGGCTC
TCGAGGCCGGCGAACGCAGCGGCAGCTCGACACCGTTCGACTTCGACGGATTCCTCGGTCGTAAGCGGGCTGACGCCTCG
CGTGGCCGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | G0TLU9 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7U4BUZ2 |