Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hipBA/HipA-couple_hipB |
| Location | 5997812..5999436 | Replicon | chromosome |
| Accession | NZ_CP085885 | ||
| Organism | Pseudomonas sp. HN2 | ||
Toxin (Protein)
| Gene name | hipA | Uniprot ID | - |
| Locus tag | LIS66_RS26760 | Protein ID | WP_227973331.1 |
| Coordinates | 5998087..5999436 (-) | Length | 450 a.a. |
Antitoxin (Protein)
| Gene name | hipB | Uniprot ID | V8R249 |
| Locus tag | LIS66_RS26755 | Protein ID | WP_024014849.1 |
| Coordinates | 5997812..5998090 (-) | Length | 93 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LIS66_RS26725 (LIS66_26725) | 5993243..5993866 | + | 624 | WP_227973328.1 | FMN-binding negative transcriptional regulator | - |
| LIS66_RS26730 (LIS66_26730) | 5993877..5994323 | + | 447 | WP_116657238.1 | GNAT family N-acetyltransferase | - |
| LIS66_RS26735 (LIS66_26735) | 5994336..5995007 | + | 672 | WP_227973329.1 | GNAT family protein | - |
| LIS66_RS26740 (LIS66_26740) | 5995129..5996031 | - | 903 | WP_227973330.1 | homocysteine S-methyltransferase family protein | - |
| LIS66_RS26745 (LIS66_26745) | 5996145..5996963 | + | 819 | WP_042608054.1 | ABC transporter substrate-binding protein | - |
| LIS66_RS26750 (LIS66_26750) | 5996960..5997796 | + | 837 | WP_064365163.1 | amino acid ABC transporter permease | - |
| LIS66_RS26755 (LIS66_26755) | 5997812..5998090 | - | 279 | WP_024014849.1 | helix-turn-helix transcriptional regulator | Antitoxin |
| LIS66_RS26760 (LIS66_26760) | 5998087..5999436 | - | 1350 | WP_227973331.1 | HipA domain-containing protein | Toxin |
| LIS66_RS26765 (LIS66_26765) | 5999547..5999747 | - | 201 | WP_227973332.1 | hypothetical protein | - |
| LIS66_RS26770 (LIS66_26770) | 5999804..6001999 | + | 2196 | WP_227973333.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| LIS66_RS26775 (LIS66_26775) | 6002194..6004002 | - | 1809 | WP_116657233.1 | sodium-extruding oxaloacetate decarboxylase subunit alpha | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 450 a.a. Molecular weight: 49905.45 Da Isoelectric Point: 5.0771
>T222234 WP_227973331.1 NZ_CP085885:c5999436-5998087 [Pseudomonas sp. HN2]
MYNLTLQIFTAGQWHDAMTLDFDDPEKGFESRCSFGYEADYLVENIELIGSPFSQAVSALYPLDWEGRRAKTPAFVHDIA
PAGAAKRFLLARLGQERPAEISADLFLLGRRTPAPIGNMRIKESAEAVDERKPIGFKREEVISRDNRFLEYAYELGAAIG
GATGAGGEAPKLLLAENSAGLLYPDAVLDDEEVRQHWFVKFARNRGGQTDQDILRSEFHYYKALQTLGIETVAAEGLALE
EANKPSLWMRRFDRQVEDGAVSRFAVESIYSLAEVTTPGSAMNHLDVIRMLAGLWRKAGQASQIPGLVADYLRRDLINKI
LGNSDNHGRNTAIIRQENAFRLAPIYDLAPMVMDDEGVTRTTKWPKELERAGDVDWRGVCRVLADSADPHDSLAGLDASA
LFEGLRADARRLAALPDILAASGLPARTMNHPSVHLKNLEQRLKEWDLQ
MYNLTLQIFTAGQWHDAMTLDFDDPEKGFESRCSFGYEADYLVENIELIGSPFSQAVSALYPLDWEGRRAKTPAFVHDIA
PAGAAKRFLLARLGQERPAEISADLFLLGRRTPAPIGNMRIKESAEAVDERKPIGFKREEVISRDNRFLEYAYELGAAIG
GATGAGGEAPKLLLAENSAGLLYPDAVLDDEEVRQHWFVKFARNRGGQTDQDILRSEFHYYKALQTLGIETVAAEGLALE
EANKPSLWMRRFDRQVEDGAVSRFAVESIYSLAEVTTPGSAMNHLDVIRMLAGLWRKAGQASQIPGLVADYLRRDLINKI
LGNSDNHGRNTAIIRQENAFRLAPIYDLAPMVMDDEGVTRTTKWPKELERAGDVDWRGVCRVLADSADPHDSLAGLDASA
LFEGLRADARRLAALPDILAASGLPARTMNHPSVHLKNLEQRLKEWDLQ
Download Length: 1350 bp
>T222234 NZ_CP117730:c350218-349841 [Klebsiella grimontii]
ATGAAAATATTATCAGACTCCCCCACACGGGCGGCGCCGTCGCGCCCGTCTCCCGTTGAAATCTGGCAGACTCTGTTGAC
GTACCTGCTGGATCAGCACTACGGTCTTACGCTTAACGACACACCGTTTGGCCACGATGGCGTGATCCAGGAGCATATTG
GCACCGGGATCACCCTGTGTGATGCGGTGAATCTTATCGTCGAAAAATACAAACTGGTCCGTATCGATCGTCACGGTTTC
AGCGCAGACACACAGTCACCGCTTATCGGCAGTATCGATATCCTGCGGGCCCGAAAAGAAACTGGGCTGATGACCCGCCA
TGGCTACAGAGCGATTACTGATATCACGACGGGTAAATACAGTGAGGCCGGGCAATGA
ATGAAAATATTATCAGACTCCCCCACACGGGCGGCGCCGTCGCGCCCGTCTCCCGTTGAAATCTGGCAGACTCTGTTGAC
GTACCTGCTGGATCAGCACTACGGTCTTACGCTTAACGACACACCGTTTGGCCACGATGGCGTGATCCAGGAGCATATTG
GCACCGGGATCACCCTGTGTGATGCGGTGAATCTTATCGTCGAAAAATACAAACTGGTCCGTATCGATCGTCACGGTTTC
AGCGCAGACACACAGTCACCGCTTATCGGCAGTATCGATATCCTGCGGGCCCGAAAAGAAACTGGGCTGATGACCCGCCA
TGGCTACAGAGCGATTACTGATATCACGACGGGTAAATACAGTGAGGCCGGGCAATGA
Antitoxin
Download Length: 93 a.a. Molecular weight: 10318.09 Da Isoelectric Point: 10.7364
>AT222234 WP_024014849.1 NZ_CP085885:c5998090-5997812 [Pseudomonas sp. HN2]
MSLTVLERTALIESIQQSLAEGTLEIGDAVRRLRVEVTGLHQTQFAKMCKISVRTLVHIEHGEGNQTLKSLNAVFRPFGM
KMGVVRIRRDTV
MSLTVLERTALIESIQQSLAEGTLEIGDAVRRLRVEVTGLHQTQFAKMCKISVRTLVHIEHGEGNQTLKSLNAVFRPFGM
KMGVVRIRRDTV
Download Length: 279 bp
>AT222234 NZ_CP117730:c350618-350259 [Klebsiella grimontii]
TTGTCGAAGAAAACCACGATAACAACGCATGATATCAGCGAACCCTGGTGGGGGCTCAGGCGCAGTGTCTCTCCGTGTTT
TGGGGCCCGTCTGGTCCAGGAGGGGAATCGGCTGAATTATCTGGCTGACCGTGCGAACTTTGATGGTCAGTTCTGCGATG
CGGATTTGCGCCATCTTGACCAGGCTTTCCCGGTATTGATGAAACAGCTGGAGTTAATGCTTACCAGCGGTGAACTGAAT
CCCCGTCATCAGCACTGCGTCACGCTGTATGCAAAAGGTCTGACCTGCGAGGCCGATACCCTCGGCTCACACGGTTACCT
TTACCTCGCGATTTACACAACGCCTGCTACTGCCGCATAA
TTGTCGAAGAAAACCACGATAACAACGCATGATATCAGCGAACCCTGGTGGGGGCTCAGGCGCAGTGTCTCTCCGTGTTT
TGGGGCCCGTCTGGTCCAGGAGGGGAATCGGCTGAATTATCTGGCTGACCGTGCGAACTTTGATGGTCAGTTCTGCGATG
CGGATTTGCGCCATCTTGACCAGGCTTTCCCGGTATTGATGAAACAGCTGGAGTTAATGCTTACCAGCGGTGAACTGAAT
CCCCGTCATCAGCACTGCGTCACGCTGTATGCAAAAGGTCTGACCTGCGAGGCCGATACCCTCGGCTCACACGGTTACCT
TTACCTCGCGATTTACACAACGCCTGCTACTGCCGCATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|