Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1975668..1975808 | Replicon | chromosome |
| Accession | NZ_CP085860 | ||
| Organism | Serratia marcescens strain MV-u1-SK1-O | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1975712..1975808 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1975668..1975808 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LKZ96_RS09460 (LKZ96_09470) | 1970938..1971333 | + | 396 | WP_025302446.1 | RidA family protein | - |
| LKZ96_RS09465 (LKZ96_09475) | 1971490..1972443 | + | 954 | WP_025302447.1 | prolyl aminopeptidase | - |
| LKZ96_RS09470 (LKZ96_09480) | 1972474..1972704 | - | 231 | WP_043141621.1 | DNA polymerase III subunit theta | - |
| LKZ96_RS09475 (LKZ96_09485) | 1973049..1973567 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| LKZ96_RS09480 (LKZ96_09490) | 1973892..1974275 | + | 384 | WP_043141618.1 | CopC domain-containing protein YobA | - |
| LKZ96_RS09485 (LKZ96_09495) | 1974278..1975159 | + | 882 | WP_213928136.1 | copper homeostasis membrane protein CopD | - |
| LKZ96_RS09490 (LKZ96_09500) | 1975229..1975570 | + | 342 | WP_089180777.1 | YebY family protein | - |
| - | 1975668..1975808 | - | 141 | - | - | Antitoxin |
| - | 1975712..1975808 | + | 97 | - | - | Toxin |
| LKZ96_RS09495 (LKZ96_09505) | 1976041..1976460 | + | 420 | WP_230201378.1 | hypothetical protein | - |
| LKZ96_RS09500 (LKZ96_09510) | 1976596..1976946 | + | 351 | WP_025302454.1 | DUF4377 domain-containing protein | - |
| LKZ96_RS09505 (LKZ96_09515) | 1976985..1977821 | - | 837 | WP_049209429.1 | aminoglycoside phosphotransferase family protein | - |
| LKZ96_RS09510 (LKZ96_09520) | 1978022..1979221 | + | 1200 | WP_025302456.1 | trans-2-enoyl-CoA reductase family protein | - |
| LKZ96_RS09515 (LKZ96_09525) | 1979379..1979942 | + | 564 | WP_033642723.1 | DUF2975 domain-containing protein | - |
| LKZ96_RS09520 (LKZ96_09530) | 1979917..1980165 | + | 249 | WP_165698098.1 | helix-turn-helix transcriptional regulator | - |
| LKZ96_RS09525 (LKZ96_09535) | 1980393..1980632 | + | 240 | WP_072008265.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T222175 NZ_CP085860:1975712-1975808 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT222175 NZ_CP085860:c1975808-1975668 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
