Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-YefM |
| Location | 1419204..1419771 | Replicon | chromosome |
| Accession | NZ_CP085860 | ||
| Organism | Serratia marcescens strain MV-u1-SK1-O | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | - |
| Locus tag | LKZ96_RS06775 | Protein ID | WP_028127915.1 |
| Coordinates | 1419204..1419509 (-) | Length | 102 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | A0A8B4G8D1 |
| Locus tag | LKZ96_RS06780 | Protein ID | WP_016928576.1 |
| Coordinates | 1419511..1419771 (-) | Length | 87 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LKZ96_RS06740 (LKZ96_06750) | 1414852..1415928 | + | 1077 | WP_033642333.1 | urea ABC transporter permease subunit UrtC | - |
| LKZ96_RS06745 (LKZ96_06755) | 1415925..1416731 | + | 807 | WP_015377102.1 | urea ABC transporter ATP-binding protein UrtD | - |
| LKZ96_RS06750 (LKZ96_06760) | 1416744..1417442 | + | 699 | WP_046686646.1 | urea ABC transporter ATP-binding subunit UrtE | - |
| LKZ96_RS06755 (LKZ96_06765) | 1417450..1417749 | - | 300 | WP_042783942.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LKZ96_RS06760 (LKZ96_06770) | 1417734..1417997 | - | 264 | WP_004939442.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| LKZ96_RS06765 (LKZ96_06775) | 1418132..1418644 | + | 513 | WP_213928312.1 | DUF2165 family protein | - |
| LKZ96_RS06770 (LKZ96_06780) | 1418667..1419179 | - | 513 | WP_148123231.1 | GNAT family N-acetyltransferase | - |
| LKZ96_RS06775 (LKZ96_06785) | 1419204..1419509 | - | 306 | WP_028127915.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| LKZ96_RS06780 (LKZ96_06790) | 1419511..1419771 | - | 261 | WP_016928576.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| LKZ96_RS06785 (LKZ96_06795) | 1419840..1421075 | - | 1236 | WP_197770476.1 | FAD-dependent oxidoreductase | - |
| LKZ96_RS06790 (LKZ96_06800) | 1421152..1421490 | - | 339 | WP_237651447.1 | DUF4865 family protein | - |
| LKZ96_RS06795 (LKZ96_06805) | 1421748..1422146 | + | 399 | WP_049203899.1 | hypothetical protein | - |
| LKZ96_RS06800 (LKZ96_06810) | 1422192..1422479 | - | 288 | WP_072269807.1 | colicin Z C-terminal domain-related protein | - |
| LKZ96_RS06805 (LKZ96_06815) | 1422495..1422701 | - | 207 | WP_072269808.1 | hypothetical protein | - |
| LKZ96_RS06810 (LKZ96_06820) | 1423100..1423249 | - | 150 | Protein_1303 | DUF4865 family protein | - |
| LKZ96_RS06815 (LKZ96_06825) | 1423355..1424224 | + | 870 | WP_025302028.1 | LysR substrate-binding domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 a.a. Molecular weight: 11954.71 Da Isoelectric Point: 9.5902
>T222173 WP_028127915.1 NZ_CP085860:c1419509-1419204 [Serratia marcescens]
MPAFRLTPQAQQDLLAIRHFTIEHWGQAQSRRYLEQLREVMHHLADMPEAGKAHFHDLGEEIRSFPYASHRIYYRNRPAG
ITVLAILHQAMVPHRHLEQRL
MPAFRLTPQAQQDLLAIRHFTIEHWGQAQSRRYLEQLREVMHHLADMPEAGKAHFHDLGEEIRSFPYASHRIYYRNRPAG
ITVLAILHQAMVPHRHLEQRL
Download Length: 306 bp
>T222173 NZ_CP117717:1359465-1359863 [Escherichia coli]
ATGCTGAAATTCATGCTGGATACCAATATCTGTATTTTCACTATTAAGAATAAACCAGTACATGTCAGAGAGCGGTTTAA
CCTGAATTCTGGCCGGATGTGTATAAGTTCTGTAACATTGATGGAGCTTATCTATGGGGCAGAAAAAAGTCAGATGCCAG
AACGCAATTTGGCGGTTATTGAAGGTTTCGTATCTCGTTTGGTAGTGCTTGATTATGATAGTGCTGCTGCGACGCATACC
GGGCAAATCAGGGCCGAGCTTGCCCGGCAGGGAAGGCCTGTTGGACCTTTTGACCAGATGATAGCGGGACATGCTCGCAG
TCGCGGTTTGATTGTGGTTACCAACAATACCCGAGAGTTTGAGCGAGTGGCGGGAATCAGACTAGAAGACTGGAGCTAA
ATGCTGAAATTCATGCTGGATACCAATATCTGTATTTTCACTATTAAGAATAAACCAGTACATGTCAGAGAGCGGTTTAA
CCTGAATTCTGGCCGGATGTGTATAAGTTCTGTAACATTGATGGAGCTTATCTATGGGGCAGAAAAAAGTCAGATGCCAG
AACGCAATTTGGCGGTTATTGAAGGTTTCGTATCTCGTTTGGTAGTGCTTGATTATGATAGTGCTGCTGCGACGCATACC
GGGCAAATCAGGGCCGAGCTTGCCCGGCAGGGAAGGCCTGTTGGACCTTTTGACCAGATGATAGCGGGACATGCTCGCAG
TCGCGGTTTGATTGTGGTTACCAACAATACCCGAGAGTTTGAGCGAGTGGCGGGAATCAGACTAGAAGACTGGAGCTAA
Antitoxin
Download Length: 87 a.a. Molecular weight: 9442.59 Da Isoelectric Point: 4.1964
>AT222173 WP_016928576.1 NZ_CP085860:c1419771-1419511 [Serratia marcescens]
MYALTANEAKTQFGDLLLKAQREPVQINRNGKPVAVVMSVEDYQALEDLKLSALQQKIAQATAEEDAGKAVDGDAFFNRL
LTDETD
MYALTANEAKTQFGDLLLKAQREPVQINRNGKPVAVVMSVEDYQALEDLKLSALQQKIAQATAEEDAGKAVDGDAFFNRL
LTDETD
Download Length: 261 bp
>AT222173 NZ_CP117717:1359238-1359465 [Escherichia coli]
ATGGAAACTACTGTATTTTTAAGTAATCGCAGTCAGGCCGTCAGATTACCGAAAGCGGTCGCTCTGCCAGAAGACGTTAA
GAAAGTAGAAATTATTGCGATTGGTCGTACAAGAATCATCACTCCCGCCGGTGAGTCCTGGGACAGTTGGTTTGATGGCG
AAAATGTGAGTGCGGATTTTATGGATATCCGTGATCAACCCGCAATGCAGGAAAGGGAATCATTTTGA
ATGGAAACTACTGTATTTTTAAGTAATCGCAGTCAGGCCGTCAGATTACCGAAAGCGGTCGCTCTGCCAGAAGACGTTAA
GAAAGTAGAAATTATTGCGATTGGTCGTACAAGAATCATCACTCCCGCCGGTGAGTCCTGGGACAGTTGGTTTGATGGCG
AAAATGTGAGTGCGGATTTTATGGATATCCGTGATCAACCCGCAATGCAGGAAAGGGAATCATTTTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|