Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-RelB |
| Location | 1982661..1983220 | Replicon | chromosome |
| Accession | NZ_CP085857 | ||
| Organism | Vibrio parahaemolyticus strain LH214 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | JK088_RS09395 | Protein ID | WP_268206325.1 |
| Coordinates | 1982942..1983220 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A347UR21 |
| Locus tag | JK088_RS09390 | Protein ID | WP_005398409.1 |
| Coordinates | 1982661..1982945 (+) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JK088_RS09345 (JK088_09350) | 1978019..1978414 | - | 396 | WP_017449623.1 | ACT domain-containing protein | - |
| JK088_RS09350 (JK088_09355) | 1978926..1979018 | - | 93 | WP_079764158.1 | DUF3265 domain-containing protein | - |
| JK088_RS09355 (JK088_09360) | 1979039..1979776 | - | 738 | WP_140352751.1 | abortive infection system antitoxin AbiGi family protein | - |
| JK088_RS09360 (JK088_09365) | 1980292..1980384 | - | 93 | WP_010644636.1 | DUF3265 domain-containing protein | - |
| JK088_RS09365 (JK088_09370) | 1980459..1980854 | + | 396 | WP_017449650.1 | leucine-rich repeat protein | - |
| JK088_RS09370 (JK088_09375) | 1980873..1980962 | - | 90 | WP_140352771.1 | DUF3265 domain-containing protein | - |
| JK088_RS09375 (JK088_09380) | 1981409..1981543 | - | 135 | WP_164842021.1 | DUF3265 domain-containing protein | - |
| JK088_RS09380 (JK088_09385) | 1982014..1982451 | - | 438 | WP_025983449.1 | GNAT family N-acetyltransferase | - |
| JK088_RS09385 (JK088_09390) | 1982493..1982584 | - | 92 | Protein_1821 | DUF3265 domain-containing protein | - |
| JK088_RS09390 (JK088_09395) | 1982661..1982945 | + | 285 | WP_005398409.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| JK088_RS09395 (JK088_09400) | 1982942..1983220 | + | 279 | WP_268206325.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| JK088_RS09400 (JK088_09405) | 1983249..1983341 | - | 93 | WP_077345744.1 | DUF3265 domain-containing protein | - |
| JK088_RS09405 (JK088_09410) | 1983368..1984129 | - | 762 | WP_017449598.1 | hypothetical protein | - |
| JK088_RS09410 (JK088_09415) | 1984266..1984550 | - | 285 | WP_014258232.1 | hypothetical protein | - |
| JK088_RS09415 (JK088_09420) | 1984594..1984683 | - | 90 | WP_075984317.1 | DUF3265 domain-containing protein | - |
| JK088_RS09420 (JK088_09425) | 1984701..1985876 | - | 1176 | WP_025502529.1 | HEPN-associated N-terminal domain-containing protein | - |
| JK088_RS09425 (JK088_09430) | 1986019..1986879 | - | 861 | WP_017449600.1 | hypothetical protein | - |
| JK088_RS09430 (JK088_09435) | 1987808..1988152 | - | 345 | WP_017449602.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integron | - | - | 1902315..2043068 | 140753 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10859.51 Da Isoelectric Point: 4.3430
>T222165 WP_268206325.1 NZ_CP085857:1982942-1983220 [Vibrio parahaemolyticus]
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGVQRDGIRGRLLIIPEISVIVSYWVEGDIIRVM
RVLHQKQKFPTD
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGVQRDGIRGRLLIIPEISVIVSYWVEGDIIRVM
RVLHQKQKFPTD
Download Length: 279 bp
>T222165 NZ_CP117715:c66358-65978 [Escherichia coli]
ATGAGACATATATCACCGGAAGAACTTGTTGCGCTTCATGATGCGAATATAAGCCGCTACGGCGGCCTGCCGGGAATGTC
TGATCCGGGTAGGGCAGAGGCCATTATCGGGAGAGTTCAGGCCAGAGTTGCCTACGAAGAGATCACCGACCTTTTCGAAG
TCTCCGCCACCTACCTGGTGGCTACAGCGAGAGGGCATATATTCAATGATGCCAATAAGCGTACCGCGCTAAACAGTGCG
CTGCTATTTCTACGCCGTAACGGGGTGCAGGTATTTGATTCACCTGAACTGGCAGACCTTACCGTAGGCGCTGCGACTGG
CGAGATATCTGTATCTTCTGTCGCCGACACGTTACGTAGATTGTATGGTTCTGCGGAGTAG
ATGAGACATATATCACCGGAAGAACTTGTTGCGCTTCATGATGCGAATATAAGCCGCTACGGCGGCCTGCCGGGAATGTC
TGATCCGGGTAGGGCAGAGGCCATTATCGGGAGAGTTCAGGCCAGAGTTGCCTACGAAGAGATCACCGACCTTTTCGAAG
TCTCCGCCACCTACCTGGTGGCTACAGCGAGAGGGCATATATTCAATGATGCCAATAAGCGTACCGCGCTAAACAGTGCG
CTGCTATTTCTACGCCGTAACGGGGTGCAGGTATTTGATTCACCTGAACTGGCAGACCTTACCGTAGGCGCTGCGACTGG
CGAGATATCTGTATCTTCTGTCGCCGACACGTTACGTAGATTGTATGGTTCTGCGGAGTAG
Antitoxin
Download Length: 95 a.a. Molecular weight: 11069.40 Da Isoelectric Point: 9.2167
>AT222165 WP_005398409.1 NZ_CP085857:1982661-1982945 [Vibrio parahaemolyticus]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFVEHQTAKSR
MEERKARIRNRGKQ
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFVEHQTAKSR
MEERKARIRNRGKQ
Download Length: 285 bp
>AT222165 NZ_CP117715:c66579-66358 [Escherichia coli]
ATGCAATCCATTAACTTCCGTACCGCGCGCGGCAACCTTTCTGAAGTGCTCAACAATGTTGAAGCCGGGGAAGAGGTTGA
AATCACCCGCAGAGGCCGTGAGCCAGCAGTAATTGTCAGCAAGGCTACTTTCGAAGCCTACAAAAAAGCGGCGCTGGATG
CTGAATTTGCATCCCTGTTTGACACCCTGGACTCCACCAACAAGGAACTGGTTAACCGATAA
ATGCAATCCATTAACTTCCGTACCGCGCGCGGCAACCTTTCTGAAGTGCTCAACAATGTTGAAGCCGGGGAAGAGGTTGA
AATCACCCGCAGAGGCCGTGAGCCAGCAGTAATTGTCAGCAAGGCTACTTTCGAAGCCTACAAAAAAGCGGCGCTGGATG
CTGAATTTGCATCCCTGTTTGACACCCTGGACTCCACCAACAAGGAACTGGTTAACCGATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|