Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-YefM |
| Location | 1931272..1931821 | Replicon | chromosome |
| Accession | NZ_CP085857 | ||
| Organism | Vibrio parahaemolyticus strain LH214 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | A0A2K7SRW8 |
| Locus tag | JK088_RS08925 | Protein ID | WP_015296889.1 |
| Coordinates | 1931522..1931821 (+) | Length | 100 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | A0A347UQT2 |
| Locus tag | JK088_RS08920 | Protein ID | WP_005442033.1 |
| Coordinates | 1931272..1931514 (+) | Length | 81 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JK088_RS08880 (JK088_08880) | 1927055..1927132 | - | 78 | WP_236556148.1 | DUF3265 domain-containing protein | - |
| JK088_RS08885 (JK088_08885) | 1927108..1927200 | - | 93 | Protein_1721 | DUF3265 domain-containing protein | - |
| JK088_RS08890 (JK088_08890) | 1927602..1927691 | - | 90 | WP_072828858.1 | DUF3265 domain-containing protein | - |
| JK088_RS08895 (JK088_08895) | 1928187..1928774 | - | 588 | WP_140352728.1 | hypothetical protein | - |
| JK088_RS08900 (JK088_08900) | 1928932..1929555 | - | 624 | WP_015296930.1 | DUF6058 family natural product biosynthesis protein | - |
| JK088_RS08905 (JK088_08905) | 1929776..1930438 | - | 663 | WP_017449570.1 | hypothetical protein | - |
| JK088_RS08910 (JK088_08910) | 1930574..1931041 | - | 468 | WP_017449571.1 | hypothetical protein | - |
| JK088_RS08915 (JK088_08915) | 1931069..1931158 | - | 90 | WP_080100235.1 | DUF3265 domain-containing protein | - |
| JK088_RS08920 (JK088_08920) | 1931272..1931514 | + | 243 | WP_005442033.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| JK088_RS08925 (JK088_08925) | 1931522..1931821 | + | 300 | WP_015296889.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| JK088_RS08930 (JK088_08930) | 1931993..1932439 | - | 447 | WP_017449572.1 | GNAT family N-acetyltransferase | - |
| JK088_RS08935 (JK088_08935) | 1932577..1933071 | - | 495 | WP_140069093.1 | GNAT family N-acetyltransferase | - |
| JK088_RS08940 (JK088_08940) | 1933104..1933196 | - | 93 | WP_080100236.1 | DUF3265 domain-containing protein | - |
| JK088_RS08945 (JK088_08945) | 1933233..1934177 | - | 945 | WP_017449574.1 | sce7725 family protein | - |
| JK088_RS08950 (JK088_08950) | 1934197..1935045 | - | 849 | WP_017449575.1 | sce7726 family protein | - |
| JK088_RS08955 (JK088_08955) | 1935730..1935822 | - | 93 | WP_074531674.1 | DUF3265 domain-containing protein | - |
| JK088_RS08960 (JK088_08960) | 1935854..1936459 | - | 606 | WP_017449577.1 | type VI secretion system-associated protein TagO | - |
| JK088_RS08965 (JK088_08965) | 1936495..1936617 | - | 123 | WP_080100237.1 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integron | - | - | 1902315..2043068 | 140753 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 100 a.a. Molecular weight: 11502.11 Da Isoelectric Point: 9.3224
>T222164 WP_015296889.1 NZ_CP085857:1931522-1931821 [Vibrio parahaemolyticus]
MQKNKYKLSNLAQSHLRKVKNYTVENFSELQWRNYKDTLLSGFQMLADNPGLGRSCDEIYPNGFYFPIGKHTAYFTKEDD
FILVVAVLGQSQLPQNHLK
MQKNKYKLSNLAQSHLRKVKNYTVENFSELQWRNYKDTLLSGFQMLADNPGLGRSCDEIYPNGFYFPIGKHTAYFTKEDD
FILVVAVLGQSQLPQNHLK
Download Length: 300 bp
>T222164 NZ_CP117714:c4675628-4675317 [Escherichia coli]
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGACCGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTTTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTATTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGACCGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTTTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTATTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA
Antitoxin
Download Length: 81 a.a. Molecular weight: 9047.26 Da Isoelectric Point: 5.6926
>AT222164 WP_005442033.1 NZ_CP085857:1931272-1931514 [Vibrio parahaemolyticus]
MHTLTANDAKRNFGELLLSAQREPVKISKNSKDTVVVMSIRDFEELEAMKVEYLKHCFKSAKEDLNNGNTVDGESFLNSL
MHTLTANDAKRNFGELLLSAQREPVKISKNSKDTVVVMSIRDFEELEAMKVEYLKHCFKSAKEDLNNGNTVDGESFLNSL
Download Length: 243 bp
>AT222164 NZ_CP117714:c4675316-4675026 [Escherichia coli]
ATGGATAAGGCACTTTTTGAGCGGTTGACTCACAGCATGGCCCAGATGAATGAAATTATTGAAGGAACGCGACAGCCTTC
GCGGACTTTTGAAGTTGATGCTATGAAAATCAAAGAAATACGCCGCGCTTCAGGGTTGTCACAATCTAAATTTGCCGATC
TTATTTCTGTAAGCGTAGACACGTTGCGTAACTGGGAGCAGGGGCGACGTTCACCGACCGGGCCTGCAAAGGCTTTGCTG
CGAGCGATTGCCAATGATCCGCAACATGTGCTGCAAGCACTTAACCGTTAG
ATGGATAAGGCACTTTTTGAGCGGTTGACTCACAGCATGGCCCAGATGAATGAAATTATTGAAGGAACGCGACAGCCTTC
GCGGACTTTTGAAGTTGATGCTATGAAAATCAAAGAAATACGCCGCGCTTCAGGGTTGTCACAATCTAAATTTGCCGATC
TTATTTCTGTAAGCGTAGACACGTTGCGTAACTGGGAGCAGGGGCGACGTTCACCGACCGGGCCTGCAAAGGCTTTGCTG
CGAGCGATTGCCAATGATCCGCAACATGTGCTGCAAGCACTTAACCGTTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A2K7SRW8 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A347UQT2 |