Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1868133..1868404 | Replicon | chromosome |
| Accession | NZ_CP085842 | ||
| Organism | Escherichia coli strain B95. delta A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1868171..1868274 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1868133..1868404 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJ838_RS09340 | 1865290..1866729 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LJ838_RS09345 | 1866847..1867083 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LJ838_RS09350 | 1867188..1867379 | + | 192 | WP_001296140.1 | YebW family protein | - |
| LJ838_RS09355 | 1867380..1868036 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1868133..1868404 | + | 272 | - | - | Antitoxin |
| - | 1868171..1868274 | - | 104 | - | - | Toxin |
| LJ838_RS09360 | 1868431..1868772 | - | 342 | WP_000976472.1 | YebY family protein | - |
| LJ838_RS09365 | 1868785..1869657 | - | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| LJ838_RS09370 | 1869661..1870035 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LJ838_RS09375 | 1870174..1870404 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LJ838_RS09380 | 1870506..1871162 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LJ838_RS09385 | 1871186..1871848 | + | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T222147 NZ_CP085842:c1868274-1868171 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT222147 NZ_CP085842:1868133-1868404 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
