Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1527813..1527958 | Replicon | chromosome |
| Accession | NZ_CP085822 | ||
| Organism | Salmonella enterica subsp. enterica serovar Enteritidis strain Charmeleon | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1527815..1527918 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1527813..1527958 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF58_RS07665 | 1523013..1523231 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| LJF58_RS07670 | 1523533..1523631 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| LJF58_RS07675 | 1523950..1525929 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| LJF58_RS07680 | 1526343..1526621 | + | 279 | WP_001575998.1 | excisionase | - |
| LJF58_RS07685 | 1526596..1527675 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 1527813..1527958 | + | 146 | - | - | Antitoxin |
| - | 1527815..1527918 | - | 104 | - | - | Toxin |
| LJF58_RS07690 | 1528058..1528411 | - | 354 | WP_000722370.1 | YebY family protein | - |
| LJF58_RS07695 | 1528428..1529303 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| LJF58_RS07700 | 1529304..1529678 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LJF58_RS07705 | 1529816..1530046 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJF58_RS07710 | 1530154..1530810 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| LJF58_RS07715 | 1530834..1531532 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sodCI | 1501821..1535297 | 33476 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T222031 NZ_CP085822:c1527918-1527815 [Salmonella enterica subsp. enterica serovar Enteritidis]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT222031 NZ_CP085822:1527813-1527958 [Salmonella enterica subsp. enterica serovar Enteritidis]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
