Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapBC/VapC-VapB
Location 3082138..3082817 Replicon chromosome
Accession NC_009525
Organism Mycobacterium tuberculosis H37Ra

Toxin (Protein)


Gene name vapC Uniprot ID P9WF90
Locus tag MRA_RS14670 Protein ID WP_003414059.1
Coordinates 3082138..3082554 (-) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TF64
Locus tag MRA_RS14675 Protein ID WP_003414061.1
Coordinates 3082551..3082817 (-) Length 89 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MRA_RS14650 3078190..3079092 - 903 WP_003900564.1 4-hydroxy-tetrahydrodipicolinate synthase -
MRA_RS14655 3079161..3079913 - 753 WP_003899465.1 FAD-dependent thymidylate synthase -
MRA_RS14660 3080157..3080432 - 276 WP_003414055.1 type I restriction endonuclease subunit S -
MRA_RS14665 3080429..3082051 - 1623 WP_003906897.1 type I restriction-modification system subunit M -
MRA_RS14670 3082138..3082554 - 417 WP_003414059.1 type II toxin-antitoxin system toxin ribonuclease C21 Toxin
MRA_RS14675 3082551..3082817 - 267 WP_003414061.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
MRA_RS14680 3082843..3083238 - 396 WP_003414064.1 type II toxin-antitoxin system VapC family toxin -
MRA_RS14685 3083235..3083504 - 270 WP_003414066.1 type II toxin-antitoxin system VapB family antitoxin -
MRA_RS14690 3083514..3084608 - 1095 WP_003414068.1 restriction endonuclease subunit S -
MRA_RS14695 3084605..3085024 - 420 WP_003414070.1 winged helix-turn-helix domain-containing protein -
MRA_RS14700 3085098..3085577 - 480 WP_003414073.1 dihydrofolate reductase -
MRA_RS14705 3085648..3086448 - 801 WP_003911953.1 thymidylate synthase -
MRA_RS14710 3086604..3087341 + 738 WP_003414079.1 dienelactone hydrolase family protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(5-123)

Antitoxin

(16-56)


Sequences


Toxin        


Download         Length: 139 a.a.        Molecular weight: 15773.00 Da        Isoelectric Point: 7.1294

>T22181 WP_003414059.1 NC_009525:c3082554-3082138 [Mycobacterium tuberculosis H37Ra]
MTTRYLLDKSAAYRAHLPAVRHRLEPLMERGLLARCGITDLEFGVSARSREDHRTLGTYRRDALEYVNTPDTVWVRAWEI
QEALTDKGFHRSVKIPDLIIAAVAEHHGIPVMHYDQDFERIAAITRQPVEWVVAPGTA

Download         Length: 417 bp

>T22181 NC_009525:c3082554-3082138 [Mycobacterium tuberculosis H37Ra]
ATGACCACGCGCTATTTGCTCGACAAATCAGCGGCTTACCGCGCGCACTTGCCCGCGGTCCGACATCGCTTGGAACCGTT
GATGGAACGCGGTCTACTGGCCCGGTGCGGCATTACCGATCTCGAGTTCGGAGTCTCGGCGCGTTCCCGCGAGGACCATC
GAACACTGGGCACCTACCGGCGTGACGCGCTCGAATACGTCAACACCCCCGACACCGTGTGGGTTCGTGCATGGGAGATC
CAAGAAGCATTGACCGACAAGGGATTTCACCGCTCGGTCAAGATCCCGGACTTGATCATTGCGGCGGTCGCCGAGCATCA
CGGCATACCCGTCATGCACTACGACCAAGACTTCGAACGCATCGCCGCCATCACACGGCAACCCGTGGAATGGGTGGTGG
CCCCAGGGACAGCGTGA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9493.77 Da        Isoelectric Point: 7.2783

>AT22181 WP_003414061.1 NC_009525:c3082817-3082551 [Mycobacterium tuberculosis H37Ra]
MHRGYALVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATGTQDEALVNAMWR
DGHPENTA

Download         Length: 267 bp

>AT22181 NC_009525:c3082817-3082551 [Mycobacterium tuberculosis H37Ra]
ATGCATCGCGGATATGCATTAGTAGTATGCTCTCCGGGTGTGACGCGCACCATGATCGACATCGATGACGACCTGCTCGC
TCGGGCCGCCAAGGAACTGGGTACCACGACAAAGAAAGACACCGTGCATGCCGCGCTGCGGGCCGCGTTGCGAGCCAGTG
CCGCGCGCTCGCTCATGAACCGGATGGCCGAGAACGCCACCGGAACCCAGGACGAAGCTCTGGTCAACGCAATGTGGCGA
GACGGCCACCCAGAGAACACGGCATGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
PDB 5SV2


Antitoxin

Source ID Structure
AlphaFold DB G0TF64

References