Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1935972..1936117 | Replicon | chromosome |
| Accession | NZ_CP085803 | ||
| Organism | Salmonella enterica subsp. enterica serovar Enteritidis strain Glaceon | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1936012..1936115 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1935972..1936117 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF50_RS09230 | 1932398..1933096 | - | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
| LJF50_RS09235 | 1933120..1933776 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| LJF50_RS09240 | 1933884..1934114 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJF50_RS09245 | 1934252..1934626 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LJF50_RS09250 | 1934627..1935502 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| LJF50_RS09255 | 1935519..1935872 | + | 354 | WP_000722370.1 | YebY family protein | - |
| - | 1935972..1936117 | - | 146 | - | - | Antitoxin |
| - | 1936012..1936115 | + | 104 | - | - | Toxin |
| LJF50_RS09260 | 1936255..1937334 | - | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| LJF50_RS09265 | 1937309..1937587 | - | 279 | WP_001575998.1 | excisionase | - |
| LJF50_RS09270 | 1938001..1939980 | + | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| LJF50_RS09275 | 1940299..1940397 | + | 99 | WP_223151200.1 | hypothetical protein | - |
| LJF50_RS09280 | 1940699..1940917 | + | 219 | WP_001524708.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sodCI / sopE2 / sopE2 | 1915973..1990016 | 74043 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221600 NZ_CP085803:1936012-1936115 [Salmonella enterica subsp. enterica serovar Enteritidis]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT221600 NZ_CP085803:c1936117-1935972 [Salmonella enterica subsp. enterica serovar Enteritidis]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
