Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | phd-doc/Doc-RelB |
| Location | 3856988..3857574 | Replicon | chromosome |
| Accession | NZ_CP085800 | ||
| Organism | Salmonella enterica subsp. enterica serovar Enteritidis strain Taillow | ||
Toxin (Protein)
| Gene name | doc | Uniprot ID | A0A3V9X0E4 |
| Locus tag | LJF53_RS18830 | Protein ID | WP_000174964.1 |
| Coordinates | 3857206..3857574 (+) | Length | 123 a.a. |
Antitoxin (Protein)
| Gene name | phd | Uniprot ID | V7IU48 |
| Locus tag | LJF53_RS18825 | Protein ID | WP_001522145.1 |
| Coordinates | 3856988..3857209 (+) | Length | 74 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF53_RS18800 (3852009) | 3852009..3853118 | + | 1110 | WP_000822978.1 | high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK | - |
| LJF53_RS18805 (3853178) | 3853178..3854104 | + | 927 | WP_000003007.1 | high-affinity branched-chain amino acid ABC transporter permease LivH | - |
| LJF53_RS18810 (3854101) | 3854101..3855378 | + | 1278 | WP_000803764.1 | branched chain amino acid ABC transporter permease LivM | - |
| LJF53_RS18815 (3855375) | 3855375..3856142 | + | 768 | WP_000082080.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG | - |
| LJF53_RS18820 (3856144) | 3856144..3856857 | + | 714 | WP_000416114.1 | high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF | - |
| LJF53_RS18825 (3856988) | 3856988..3857209 | + | 222 | WP_001522145.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| LJF53_RS18830 (3857206) | 3857206..3857574 | + | 369 | WP_000174964.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin |
| LJF53_RS18835 (3857833) | 3857833..3859149 | + | 1317 | WP_000624755.1 | sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB | - |
| LJF53_RS18840 (3859254) | 3859254..3860141 | + | 888 | WP_000099303.1 | sn-glycerol-3-phosphate ABC transporter permease UgpA | - |
| LJF53_RS18845 (3860138) | 3860138..3860983 | + | 846 | WP_000572196.1 | sn-glycerol-3-phosphate ABC transporter permease UgpE | - |
| LJF53_RS18850 (3860985) | 3860985..3862055 | + | 1071 | WP_000907840.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3854101..3862792 | 8691 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 123 a.a. Molecular weight: 13601.91 Da Isoelectric Point: 6.7252
>T221533 WP_000174964.1 NZ_CP085800:3857206-3857574 [Salmonella enterica subsp. enterica serovar Enteritidis]
MTLQLISAEEIIQFHDRLLRVTPGVTGMPDPGRAEALMYRVLNQIEYEGVTDVWLLAAMHLLAISRGHIFNDGNKRTALF
ITLLFLKRNGISLAANPDFVDMTVDAAAGRLTLEQIVVRLRA
MTLQLISAEEIIQFHDRLLRVTPGVTGMPDPGRAEALMYRVLNQIEYEGVTDVWLLAAMHLLAISRGHIFNDGNKRTALF
ITLLFLKRNGISLAANPDFVDMTVDAAAGRLTLEQIVVRLRA
Download Length: 369 bp
>T221533 NZ_CP117416:1368284-1368634 [Paenibacillus kyungheensis]
TTGATCGTAAAACGTGGCGATGTATTTTTTGCAGATTTATCGCCCGTCGTCGGCTCCGAACAGGGCGGCGTGAGGCCGGT
TCTGGTTATCCAGAATGATATCGGCAACCGTTTCAGTCCAACGGTTATTGTGGCGGCAATTACGGCACAGATTCAAAAAG
CCAAATTGCCAACACATGTGGAGATTGACGCGAAATCTCATGGGTTTGATAGAGATTCCGTCATTTTGCTGGAACAGATT
CGAACTATTGATAAACAGCGTCTGACTGACAAAATCACACATCTGGATGAAGAAACAATGCGTCGTGTACATGATGCGCT
CCAGATCAGTTTGGGCTTAGTTGAATTTTAA
TTGATCGTAAAACGTGGCGATGTATTTTTTGCAGATTTATCGCCCGTCGTCGGCTCCGAACAGGGCGGCGTGAGGCCGGT
TCTGGTTATCCAGAATGATATCGGCAACCGTTTCAGTCCAACGGTTATTGTGGCGGCAATTACGGCACAGATTCAAAAAG
CCAAATTGCCAACACATGTGGAGATTGACGCGAAATCTCATGGGTTTGATAGAGATTCCGTCATTTTGCTGGAACAGATT
CGAACTATTGATAAACAGCGTCTGACTGACAAAATCACACATCTGGATGAAGAAACAATGCGTCGTGTACATGATGCGCT
CCAGATCAGTTTGGGCTTAGTTGAATTTTAA
Antitoxin
Download Length: 74 a.a. Molecular weight: 8166.17 Da Isoelectric Point: 5.0775
>AT221533 WP_001522145.1 NZ_CP085800:3856988-3857209 [Salmonella enterica subsp. enterica serovar Enteritidis]
MRTVNYSEARQNLAEVLESAVTAGPVTITRRGHKSAVIISAEEFERYQTARMDDEFAAIMAVHGNELRELADK
MRTVNYSEARQNLAEVLESAVTAGPVTITRRGHKSAVIISAEEFERYQTARMDDEFAAIMAVHGNELRELADK
Download Length: 222 bp
>AT221533 NZ_CP117416:1367999-1368280 [Paenibacillus kyungheensis]
TTGGACAACATGCAAAATGCGCAGAGCATTATGATCCGTTTGCCGGATCAACTTCTGCAAGAAGTGGATGGTATCGCAGC
TTTAGAAGATTCCGATCGCAGTGAACTAATCAGAAAAGCCACAAAAATTTATCTCACTGAACGCAAAAAGCGGTATATCC
GTGAAGCGATGCAGCGTGGATATATGGAAATGGCCAAAATTAATCTGAGAATTGCTTGCGAAGCTTTTCATGCGGAGGAA
GAGGCGGACATCACTCTGGACCGTTTAGTTAGCGGGGTGTAG
TTGGACAACATGCAAAATGCGCAGAGCATTATGATCCGTTTGCCGGATCAACTTCTGCAAGAAGTGGATGGTATCGCAGC
TTTAGAAGATTCCGATCGCAGTGAACTAATCAGAAAAGCCACAAAAATTTATCTCACTGAACGCAAAAAGCGGTATATCC
GTGAAGCGATGCAGCGTGGATATATGGAAATGGCCAAAATTAATCTGAGAATTGCTTGCGAAGCTTTTCATGCGGAGGAA
GAGGCGGACATCACTCTGGACCGTTTAGTTAGCGGGGTGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|