Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1527814..1527959 | Replicon | chromosome |
| Accession | NZ_CP085799 | ||
| Organism | Salmonella enterica subsp. enterica serovar Enteritidis strain Swellow | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1527816..1527919 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1527814..1527959 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF54_RS07670 | 1523014..1523232 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| LJF54_RS07675 | 1523534..1523632 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| LJF54_RS07680 | 1523951..1525930 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| LJF54_RS07685 | 1526344..1526622 | + | 279 | WP_001575998.1 | excisionase | - |
| LJF54_RS07690 | 1526597..1527676 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 1527814..1527959 | + | 146 | - | - | Antitoxin |
| - | 1527816..1527919 | - | 104 | - | - | Toxin |
| LJF54_RS07695 | 1528059..1528412 | - | 354 | WP_000722370.1 | YebY family protein | - |
| LJF54_RS07700 | 1528429..1529304 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| LJF54_RS07705 | 1529305..1529679 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LJF54_RS07710 | 1529817..1530047 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJF54_RS07715 | 1530155..1530811 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| LJF54_RS07720 | 1530835..1531533 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sodCI | 1491786..1533621 | 41835 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221488 NZ_CP085799:c1527919-1527816 [Salmonella enterica subsp. enterica serovar Enteritidis]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT221488 NZ_CP085799:1527814-1527959 [Salmonella enterica subsp. enterica serovar Enteritidis]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
