Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2728848..2729057 | Replicon | chromosome |
| Accession | NZ_CP085780 | ||
| Organism | Enterobacter hormaechei strain 48411CZ | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2728861..2728964 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2728848..2729057 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJU35_RS13070 (LJU35_13070) | 2725116..2726564 | + | 1449 | WP_195764999.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LJU35_RS13075 (LJU35_13075) | 2726671..2726910 | + | 240 | WP_003859885.1 | YebV family protein | - |
| LJU35_RS13080 (LJU35_13080) | 2726945..2727589 | - | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| LJU35_RS13085 (LJU35_13085) | 2727757..2728737 | + | 981 | WP_045345038.1 | VirK/YbjX family protein | - |
| LJU35_RS13090 (LJU35_13090) | 2728783..2728980 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2728848..2729057 | + | 210 | - | - | Antitoxin |
| - | 2728861..2728964 | - | 104 | - | - | Toxin |
| LJU35_RS13095 (LJU35_13095) | 2729106..2729444 | - | 339 | WP_032669635.1 | YebY family protein | - |
| LJU35_RS13100 (LJU35_13100) | 2729461..2730330 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| LJU35_RS13105 (LJU35_13105) | 2730332..2730703 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| LJU35_RS13110 (LJU35_13110) | 2730841..2731071 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LJU35_RS13115 (LJU35_13115) | 2731183..2731833 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| LJU35_RS13120 (LJU35_13120) | 2731858..2732520 | + | 663 | WP_047642503.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221287 NZ_CP085780:c2728964-2728861 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT221287 NZ_CP085780:2728848-2729057 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
