Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3308080..3308289 | Replicon | chromosome |
| Accession | NZ_CP085774 | ||
| Organism | Enterobacter hormaechei strain 48947CZ | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3308093..3308196 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3308080..3308289 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJU36_RS15990 (LJU36_15990) | 3304348..3305796 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LJU36_RS15995 (LJU36_15995) | 3305903..3306142 | + | 240 | WP_003859885.1 | YebV family protein | - |
| LJU36_RS16000 (LJU36_16000) | 3306177..3306821 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| LJU36_RS16005 (LJU36_16005) | 3306989..3307969 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| LJU36_RS16010 (LJU36_16010) | 3308015..3308212 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 3308080..3308289 | + | 210 | - | - | Antitoxin |
| - | 3308093..3308196 | - | 104 | - | - | Toxin |
| LJU36_RS16015 (LJU36_16015) | 3308338..3308676 | - | 339 | WP_003859787.1 | YebY family protein | - |
| LJU36_RS16020 (LJU36_16020) | 3308693..3309562 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| LJU36_RS16025 (LJU36_16025) | 3309564..3309935 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| LJU36_RS16030 (LJU36_16030) | 3310073..3310303 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LJU36_RS16035 (LJU36_16035) | 3310415..3311065 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| LJU36_RS16040 (LJU36_16040) | 3311090..3311752 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221272 NZ_CP085774:c3308196-3308093 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT221272 NZ_CP085774:3308080-3308289 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
