Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 29312..29838 | Replicon | plasmid p54569CZ_VIM |
| Accession | NZ_CP085763 | ||
| Organism | Enterobacter hormaechei strain 54569CZ | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | LJU41_RS22495 | Protein ID | WP_000323025.1 |
| Coordinates | 29312..29599 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | J5W3H0 |
| Locus tag | LJU41_RS22500 | Protein ID | WP_004196370.1 |
| Coordinates | 29599..29838 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJU41_RS22460 (LJU41_22460) | 24831..25454 | - | 624 | Protein_26 | conjugative transfer relaxase/helicase TraI | - |
| LJU41_RS22465 (LJU41_22465) | 25981..26181 | - | 201 | WP_013087182.1 | hypothetical protein | - |
| LJU41_RS22470 (LJU41_22470) | 26269..26730 | - | 462 | WP_013087181.1 | hypothetical protein | - |
| LJU41_RS22475 (LJU41_22475) | 26791..27105 | - | 315 | WP_044157807.1 | hypothetical protein | - |
| LJU41_RS22480 (LJU41_22480) | 27985..28095 | - | 111 | WP_230678187.1 | DUF5431 family protein | - |
| LJU41_RS22490 (LJU41_22490) | 28211..29245 | + | 1035 | Protein_31 | IS481 family transposase | - |
| LJU41_RS22495 (LJU41_22495) | 29312..29599 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| LJU41_RS22500 (LJU41_22500) | 29599..29838 | - | 240 | WP_004196370.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| LJU41_RS22505 (LJU41_22505) | 29863..29961 | + | 99 | Protein_34 | protein YdfV | - |
| LJU41_RS22510 (LJU41_22510) | 30158..31278 | + | 1121 | WP_087451024.1 | IS3-like element ISSen4 family transposase | - |
| LJU41_RS22515 (LJU41_22515) | 31314..31679 | + | 366 | WP_009651956.1 | hypothetical protein | - |
| LJU41_RS22520 (LJU41_22520) | 31723..32460 | + | 738 | WP_008460272.1 | HupE/UreJ family protein | - |
| LJU41_RS22525 (LJU41_22525) | 32474..33163 | + | 690 | WP_013087175.1 | hypothetical protein | - |
| LJU41_RS22530 (LJU41_22530) | 33194..34570 | - | 1377 | WP_004196363.1 | chromate efflux transporter | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | sul1 / qacE / ant(3'')-Ia / blaVIM-1 / aac(6')-Ib-cr / blaOXA-1 / aac(3)-IIa / dfrA14 / qnrB56 | - | 1..171616 | 171616 | |
| - | inside | IScluster/Tn | sul1 / qacE / ant(3'')-Ia / blaVIM-1 | - | 375..31278 | 30903 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T221239 WP_000323025.1 NZ_CP085763:c29599-29312 [Enterobacter hormaechei]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T221239 NZ_CP117364:41984-42265 [Salmonella enterica subsp. enterica serovar Dublin]
ATGACCTATGAACTGGCTTTTGACCGCAGAGCACTGAAGGAATGGCAGAAACTCGGCCACACCATCCGTGAACAATTCAA
AAAGAAACTGGCAGAACGGCTGGAAAATCCACGCGTACCCGCAGCCCGGTTACATGGTCATGCTGATCGCTATAAAATCA
AACTTCGTGCATCTGGCTACAGACTTGTATATCAAGTCATTGATGAGAAAGTCGTTTTACTCGTTATTGCCGTTGGAAGA
AGGGAAAGCAGCGAAGTCTATCAGATCGCAGATTTGCGCTAA
ATGACCTATGAACTGGCTTTTGACCGCAGAGCACTGAAGGAATGGCAGAAACTCGGCCACACCATCCGTGAACAATTCAA
AAAGAAACTGGCAGAACGGCTGGAAAATCCACGCGTACCCGCAGCCCGGTTACATGGTCATGCTGATCGCTATAAAATCA
AACTTCGTGCATCTGGCTACAGACTTGTATATCAAGTCATTGATGAGAAAGTCGTTTTACTCGTTATTGCCGTTGGAAGA
AGGGAAAGCAGCGAAGTCTATCAGATCGCAGATTTGCGCTAA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9018.43 Da Isoelectric Point: 4.3894
>AT221239 WP_004196370.1 NZ_CP085763:c29838-29599 [Enterobacter hormaechei]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLCNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLCNPKPVRVTLDEL
Download Length: 240 bp
>AT221239 NZ_CP117364:41743-41994 [Salmonella enterica subsp. enterica serovar Dublin]
ATGAGCTATCAAATTCTGACAACCACAGCGGCCAGTATTACTGACCTGAAAAAAAATCCTATGGGAACCGTAGCTGAAGG
TGAAGGGGACGCTGTTGCGATCCTGAACCGAAACGAACCGGCGTTCTATTGCGTTCCACCAAAACTTTACGCCTACTATC
GGGAACTCGCTGAAGATGCTGAGTTAAACGCTGTTGCTGATGAGCGCATGAAAAACCCGGAAATTGTGAAGGTTAACCTG
GATGACCTATGA
ATGAGCTATCAAATTCTGACAACCACAGCGGCCAGTATTACTGACCTGAAAAAAAATCCTATGGGAACCGTAGCTGAAGG
TGAAGGGGACGCTGTTGCGATCCTGAACCGAAACGAACCGGCGTTCTATTGCGTTCCACCAAAACTTTACGCCTACTATC
GGGAACTCGCTGAAGATGCTGAGTTAAACGCTGTTGCTGATGAGCGCATGAAAAACCCGGAAATTGTGAAGGTTAACCTG
GATGACCTATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|