Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 203734..204260 | Replicon | plasmid p57816CZ_MCR_9 |
| Accession | NZ_CP085755 | ||
| Organism | Enterobacter hormaechei strain 57816CZ | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | LJU43_RS25415 | Protein ID | WP_000323025.1 |
| Coordinates | 203734..204021 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | LJU43_RS25420 | Protein ID | WP_000534858.1 |
| Coordinates | 204021..204260 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJU43_RS25380 (LJU43_25380) | 199304..199480 | - | 177 | WP_001371930.1 | hypothetical protein | - |
| LJU43_RS25385 (LJU43_25385) | 199991..200935 | + | 945 | WP_000778029.1 | DUF5417 domain-containing protein | - |
| LJU43_RS25390 (LJU43_25390) | 201031..201633 | + | 603 | WP_012695474.1 | hypothetical protein | - |
| LJU43_RS25395 (LJU43_25395) | 201693..202043 | + | 351 | WP_000743059.1 | hypothetical protein | - |
| LJU43_RS25400 (LJU43_25400) | 202575..202895 | + | 321 | WP_000332796.1 | hypothetical protein | - |
| LJU43_RS25405 (LJU43_25405) | 203508..203633 | - | 126 | WP_229020258.1 | DUF5431 family protein | - |
| LJU43_RS25415 (LJU43_25415) | 203734..204021 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| LJU43_RS25420 (LJU43_25420) | 204021..204260 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| LJU43_RS25425 (LJU43_25425) | 204285..204389 | + | 105 | Protein_212 | protein YdfV | - |
| LJU43_RS25430 (LJU43_25430) | 204523..205446 | - | 924 | WP_000167917.1 | cation diffusion facilitator family transporter | - |
| LJU43_RS25435 (LJU43_25435) | 205646..206218 | - | 573 | WP_001515348.1 | cytochrome b/b6 domain-containing protein | - |
| LJU43_RS25440 (LJU43_25440) | 206694..207932 | - | 1239 | WP_000219087.1 | IS110-like element ISEsa2 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | blaTEM-1B / catA2 / aadA2 / qacE / sul1 / dfrA19 / aph(3'')-Ib / aph(6)-Id / mcr-9 / tet(D) / aac(6')-IIc / ere(A) / sul2 / blaSHV-12 | - | 1..289297 | 289297 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T221223 WP_000323025.1 NZ_CP085755:c204021-203734 [Enterobacter hormaechei]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T221223 NZ_CP117362:358257-358532 [Salmonella enterica subsp. enterica serovar Dublin]
ATGGGGCAAAGGGAAATTGAATATTCGGGACAGTTCCAGAAAGATGTAAAACGGGCACAAAAGCGTCATAAGGATGTCGG
CAAACTTAAAACACTTATGACGCTTCTGATTCACCACCCTTTTCCCCTTCCTGCCATTTATAAAGATCACCCGTTACAAG
GTTCATATAGCGGATACCGGGATGCCCATATTGAGCCTGACTGGATTCTTATTTATAAGATAACGGATGAATGCCTGCGA
TTTGAACGAACAGGAACGCATGCCGATTTATTTTAA
ATGGGGCAAAGGGAAATTGAATATTCGGGACAGTTCCAGAAAGATGTAAAACGGGCACAAAAGCGTCATAAGGATGTCGG
CAAACTTAAAACACTTATGACGCTTCTGATTCACCACCCTTTTCCCCTTCCTGCCATTTATAAAGATCACCCGTTACAAG
GTTCATATAGCGGATACCGGGATGCCCATATTGAGCCTGACTGGATTCTTATTTATAAGATAACGGATGAATGCCTGCGA
TTTGAACGAACAGGAACGCATGCCGATTTATTTTAA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT221223 WP_000534858.1 NZ_CP085755:c204260-204021 [Enterobacter hormaechei]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT221223 NZ_CP117362:357994-358254 [Salmonella enterica subsp. enterica serovar Dublin]
ATGGCTGCAAATGCGCTTGTTCGTGCCCGTATCGACGAAACGCTGAAGGACCAGGCGGCAGATGTCCTGGCTGAAATGGG
GTTAACCATTTCTGATTTGATACGGATTACACTGACTAAAGTTGCGCGTGAAAAGGCATTGCCTTTTGATTTGCGCATAC
CCAATGAGTTAACGTCACGAACGATAGAAAATAGCGAAGCTGGCGTTGATATTCATAAAGCCAAAGATGCTGATGATTTG
TTTGACCAGTTAGGGATCTGA
ATGGCTGCAAATGCGCTTGTTCGTGCCCGTATCGACGAAACGCTGAAGGACCAGGCGGCAGATGTCCTGGCTGAAATGGG
GTTAACCATTTCTGATTTGATACGGATTACACTGACTAAAGTTGCGCGTGAAAAGGCATTGCCTTTTGATTTGCGCATAC
CCAATGAGTTAACGTCACGAACGATAGAAAATAGCGAAGCTGGCGTTGATATTCATAAAGCCAAAGATGCTGATGATTTG
TTTGACCAGTTAGGGATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|