Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4860052..4860261 | Replicon | chromosome |
| Accession | NZ_CP085753 | ||
| Organism | Enterobacter hormaechei strain 57816CZ | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4860065..4860168 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4860052..4860261 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJU43_RS23775 | 4856320..4857768 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LJU43_RS23780 | 4857875..4858114 | + | 240 | WP_003859885.1 | YebV family protein | - |
| LJU43_RS23785 | 4858149..4858793 | - | 645 | WP_017384338.1 | protein-serine/threonine phosphatase | - |
| LJU43_RS23790 | 4858961..4859941 | + | 981 | WP_045142106.1 | VirK/YbjX family protein | - |
| LJU43_RS23795 | 4859987..4860184 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 4860052..4860261 | + | 210 | - | - | Antitoxin |
| - | 4860065..4860168 | - | 104 | - | - | Toxin |
| LJU43_RS23800 | 4860310..4860648 | - | 339 | WP_003859787.1 | YebY family protein | - |
| LJU43_RS23805 | 4860665..4861534 | - | 870 | WP_045142107.1 | copper homeostasis membrane protein CopD | - |
| LJU43_RS23810 | 4861536..4861907 | - | 372 | WP_045142108.1 | CopC domain-containing protein YobA | - |
| LJU43_RS23815 | 4862045..4862275 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LJU43_RS23820 | 4862387..4863037 | + | 651 | WP_045142109.1 | carbon-nitrogen hydrolase family protein | - |
| LJU43_RS23825 | 4863062..4863724 | + | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221213 NZ_CP085753:c4860168-4860065 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT221213 NZ_CP085753:4860052-4860261 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAGCCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAGCCGC
