Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3323399..3323607 | Replicon | chromosome |
| Accession | NZ_CP085748 | ||
| Organism | Enterobacter hormaechei strain 59732CZ | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3323412..3323515 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3323399..3323607 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJU46_RS16235 (LJU46_16235) | 3319667..3321115 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LJU46_RS16240 (LJU46_16240) | 3321222..3321461 | + | 240 | WP_003859885.1 | YebV family protein | - |
| LJU46_RS16245 (LJU46_16245) | 3321496..3322140 | - | 645 | WP_017384338.1 | protein-serine/threonine phosphatase | - |
| LJU46_RS16250 (LJU46_16250) | 3322308..3323288 | + | 981 | WP_045142106.1 | VirK/YbjX family protein | - |
| - | 3323399..3323607 | + | 209 | - | - | Antitoxin |
| - | 3323412..3323515 | - | 104 | - | - | Toxin |
| LJU46_RS16260 (LJU46_16260) | 3323656..3323994 | - | 339 | WP_003859787.1 | YebY family protein | - |
| LJU46_RS16265 (LJU46_16265) | 3324011..3324880 | - | 870 | WP_045142107.1 | copper homeostasis membrane protein CopD | - |
| LJU46_RS16270 (LJU46_16270) | 3324882..3325253 | - | 372 | WP_045142108.1 | CopC domain-containing protein YobA | - |
| LJU46_RS16275 (LJU46_16275) | 3325391..3325621 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LJU46_RS16280 (LJU46_16280) | 3325733..3326383 | + | 651 | WP_045142109.1 | carbon-nitrogen hydrolase family protein | - |
| LJU46_RS16285 (LJU46_16285) | 3326408..3327070 | + | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221189 NZ_CP085748:c3323515-3323412 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 209 bp
>AT221189 NZ_CP085748:3323399-3323607 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAA
AAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAGCCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAA
AAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAGCCGC
