Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2634164..2634435 | Replicon | chromosome |
| Accession | NZ_CP085638 | ||
| Organism | Escherichia coli strain fEC.1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2634202..2634305 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2634164..2634435 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJX82_RS12735 | 2631321..2632760 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LJX82_RS12740 | 2632878..2633114 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LJX82_RS12745 | 2633219..2633410 | + | 192 | WP_001296140.1 | YebW family protein | - |
| LJX82_RS12750 | 2633411..2634067 | - | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| - | 2634164..2634435 | + | 272 | - | - | Antitoxin |
| - | 2634202..2634305 | - | 104 | - | - | Toxin |
| LJX82_RS12755 | 2634463..2634804 | - | 342 | WP_000976472.1 | YebY family protein | - |
| LJX82_RS12760 | 2634817..2635689 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| LJX82_RS12765 | 2635693..2636067 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| LJX82_RS12770 | 2636206..2636436 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LJX82_RS12775 | 2636538..2637194 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LJX82_RS12780 | 2637218..2637880 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221032 NZ_CP085638:c2634305-2634202 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT221032 NZ_CP085638:2634164-2634435 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
