Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1973577..1973848 | Replicon | chromosome |
| Accession | NZ_CP085637 | ||
| Organism | Escherichia coli strain fECg99.1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1973707..1973810 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1973577..1973848 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJU33_RS09445 | 1970132..1970794 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LJU33_RS09450 | 1970818..1971474 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LJU33_RS09455 | 1971576..1971806 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LJU33_RS09460 | 1971945..1972319 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| LJU33_RS09465 | 1972323..1973195 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| LJU33_RS09470 | 1973208..1973549 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1973577..1973848 | - | 272 | - | - | Antitoxin |
| - | 1973707..1973810 | + | 104 | - | - | Toxin |
| LJU33_RS09475 | 1973945..1974601 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LJU33_RS09480 | 1974602..1974793 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LJU33_RS09485 | 1974898..1975134 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LJU33_RS09490 | 1975252..1976691 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221007 NZ_CP085637:1973707-1973810 [Escherichia coli]
GGCAAGGCAACTAAGCCTGTATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGTATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT221007 NZ_CP085637:c1973848-1973577 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATACAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATACAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
