Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2144669..2144937 | Replicon | chromosome |
| Accession | NZ_CP085619 | ||
| Organism | Escherichia coli strain EC32 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2144797..2144899 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2144669..2144937 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJN50_RS10390 | 2141222..2141884 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LJN50_RS10395 | 2141908..2142564 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LJN50_RS10400 | 2142666..2142896 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LJN50_RS10405 | 2143035..2143409 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LJN50_RS10410 | 2143413..2144285 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| LJN50_RS10415 | 2144298..2144639 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2144669..2144937 | - | 269 | - | - | Antitoxin |
| - | 2144797..2144899 | + | 103 | - | - | Toxin |
| LJN50_RS10420 | 2145034..2145690 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| LJN50_RS10425 | 2145691..2145882 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LJN50_RS10430 | 2145987..2146223 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LJN50_RS10435 | 2146340..2147779 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T220915 NZ_CP085619:2144797-2144899 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT220915 NZ_CP085619:c2144937-2144669 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
