Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | rlegTA/AbiEii(toxin) |
| Location | 1371750..1373170 | Replicon | chromosome |
| Accession | NZ_CP085345 | ||
| Organism | Cupriavidus sp. MP-37 | ||
Toxin (Protein)
| Gene name | rlegT | Uniprot ID | - |
| Locus tag | LIN44_RS22610 | Protein ID | WP_227314520.1 |
| Coordinates | 1372298..1373170 (+) | Length | 291 a.a. |
Antitoxin (Protein)
| Gene name | rlegA | Uniprot ID | - |
| Locus tag | LIN44_RS22605 | Protein ID | WP_255638379.1 |
| Coordinates | 1371750..1372301 (+) | Length | 184 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LIN44_RS22570 (LIN44_22570) | 1366785..1368011 | - | 1227 | WP_227314514.1 | flagellar hook protein FlgE | - |
| LIN44_RS22575 (LIN44_22575) | 1368089..1368754 | - | 666 | WP_227314515.1 | flagellar hook assembly protein FlgD | - |
| LIN44_RS22580 (LIN44_22580) | 1368813..1369220 | - | 408 | WP_018006607.1 | flagellar basal body rod protein FlgC | - |
| LIN44_RS22585 (LIN44_22585) | 1369236..1369643 | - | 408 | WP_227314516.1 | flagellar basal body rod protein FlgB | - |
| LIN44_RS22590 (LIN44_22590) | 1369878..1370654 | + | 777 | WP_227314517.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| LIN44_RS22595 (LIN44_22595) | 1370817..1371137 | + | 321 | WP_227314518.1 | flagellar biosynthesis anti-sigma factor FlgM | - |
| LIN44_RS22600 (LIN44_22600) | 1371143..1371604 | + | 462 | WP_025583011.1 | flagellar protein FlgN | - |
| LIN44_RS22605 (LIN44_22605) | 1371750..1372301 | + | 552 | WP_255638379.1 | hypothetical protein | Antitoxin |
| LIN44_RS22610 (LIN44_22610) | 1372298..1373170 | + | 873 | WP_227314520.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin |
| LIN44_RS22615 (LIN44_22615) | 1373291..1373728 | - | 438 | WP_227314521.1 | flagellar protein FlhE | - |
| LIN44_RS22620 (LIN44_22620) | 1373728..1374444 | - | 717 | WP_092316269.1 | RNA polymerase sigma factor FliA | - |
| LIN44_RS22625 (LIN44_22625) | 1374543..1375334 | - | 792 | WP_227316403.1 | flagellar synthesis regulator MotR | - |
| LIN44_RS22630 (LIN44_22630) | 1375346..1377670 | - | 2325 | WP_227314522.1 | flagellar biosynthesis protein FlhF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 291 a.a. Molecular weight: 31695.53 Da Isoelectric Point: 6.7335
>T220730 WP_227314520.1 NZ_CP085345:1372298-1373170 [Cupriavidus sp. MP-37]
MISNLAESVRARLLNIAKAQKADFNQVLVRYALERMLYRLSQSPHGERFVLKGALLFTLWYDMPHRATRDADFLGFGASD
LASIARTFRDIAAVSADDGMTFDPASVTTEEIRKEAGYAGARVLLTGELARAQCRVQVDIGFGDAITPGPVDAIYPVLLD
DLPAPRLRAYPVYTVVSEKLHAIALLGMANSRLKDYFDLAILLGRETLDAETLASAVAATFIRRGMTVPGALPLGLTEEF
STDSSRQALWQAFLKKNSLTWEGLPDTVAVLRTVLEPVLIRARAIAGQQG
MISNLAESVRARLLNIAKAQKADFNQVLVRYALERMLYRLSQSPHGERFVLKGALLFTLWYDMPHRATRDADFLGFGASD
LASIARTFRDIAAVSADDGMTFDPASVTTEEIRKEAGYAGARVLLTGELARAQCRVQVDIGFGDAITPGPVDAIYPVLLD
DLPAPRLRAYPVYTVVSEKLHAIALLGMANSRLKDYFDLAILLGRETLDAETLASAVAATFIRRGMTVPGALPLGLTEEF
STDSSRQALWQAFLKKNSLTWEGLPDTVAVLRTVLEPVLIRARAIAGQQG
Download Length: 873 bp
>T220730 NZ_CP117261:c971542-971252 [Rhizobium tumorigenes]
GTGATCGAAGTTCGGCAGACCGCTATCTTTGCGAATTGGCTCGATGCGCTCCGAGACGCGCAGGCGCGCCAACGCATCGT
CGTTCGCATCCGGCGGCTCGAACTCGGTAACCCTGGAGATATCAAGCCGGTCGGTGAAGGTGTCAGCGAAATGCGCATCC
CCCATGGCCCCGGCTACAGGCTCTATTTCACCCGATCCGGTGCGACGATCGTCATTCTTTTATGCGGCGGCGACAAGTCA
TCGCAGGCAAGGGACATCGCAATCGCCCGGCAATTGGCTAAGGAGATTTGA
GTGATCGAAGTTCGGCAGACCGCTATCTTTGCGAATTGGCTCGATGCGCTCCGAGACGCGCAGGCGCGCCAACGCATCGT
CGTTCGCATCCGGCGGCTCGAACTCGGTAACCCTGGAGATATCAAGCCGGTCGGTGAAGGTGTCAGCGAAATGCGCATCC
CCCATGGCCCCGGCTACAGGCTCTATTTCACCCGATCCGGTGCGACGATCGTCATTCTTTTATGCGGCGGCGACAAGTCA
TCGCAGGCAAGGGACATCGCAATCGCCCGGCAATTGGCTAAGGAGATTTGA
Antitoxin
Download Length: 184 a.a. Molecular weight: 20382.68 Da Isoelectric Point: 8.2876
>AT220730 WP_255638379.1 NZ_CP085345:1371750-1372301 [Cupriavidus sp. MP-37]
MLRPADLDNIEVPRVILSRMVGAGLLEKIDRGVYRLSNDPRSEHESLAAIATRVPQAVFCLLTALQFHGLTTQLPREVWI
AMPRGSHAPRIDFPPIKMIQVADDIFSAGIDVVERDGIPLRVYSAARTVADCFKHRNKVGLDVALEALRDARAQQKASAD
DLWRFAKICRVADVMRPYLEAVG
MLRPADLDNIEVPRVILSRMVGAGLLEKIDRGVYRLSNDPRSEHESLAAIATRVPQAVFCLLTALQFHGLTTQLPREVWI
AMPRGSHAPRIDFPPIKMIQVADDIFSAGIDVVERDGIPLRVYSAARTVADCFKHRNKVGLDVALEALRDARAQQKASAD
DLWRFAKICRVADVMRPYLEAVG
Download Length: 552 bp
>AT220730 NZ_CP117261:c971251-970955 [Rhizobium tumorigenes]
ATGCCCTTGGAAACCACCCACTTTGACATCCAGGACCATTTGGCCACACCGGCCGACCGCATGCTCTATCTCGAAGCCGC
TTTCGAGGACGGTGATCCGGCGCTCATCGCCCAGGCCCTCGGCGACGTTGCCCGTGCTGCCGGCATGACGTCTGTCGCCA
AGGAAGCGGGCGTGACCCGGGAGGCGCTTTATAAATCACTGAGCGAAGCCGGTGATCCGCGACTGTCAACGTTTCTCGGC
GTGATCAAGGCGCTGGGCTTGAAAGTGTCGATTGCGGCAGATCAGAATGCCGCGTAG
ATGCCCTTGGAAACCACCCACTTTGACATCCAGGACCATTTGGCCACACCGGCCGACCGCATGCTCTATCTCGAAGCCGC
TTTCGAGGACGGTGATCCGGCGCTCATCGCCCAGGCCCTCGGCGACGTTGCCCGTGCTGCCGGCATGACGTCTGTCGCCA
AGGAAGCGGGCGTGACCCGGGAGGCGCTTTATAAATCACTGAGCGAAGCCGGTGATCCGCGACTGTCAACGTTTCTCGGC
GTGATCAAGGCGCTGGGCTTGAAAGTGTCGATTGCGGCAGATCAGAATGCCGCGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|