Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2558122..2558269 | Replicon | chromosome |
| Accession | NZ_CP085197 | ||
| Organism | Klebsiella quasipneumoniae strain NDM-101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2558163..2558265 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2558122..2558269 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH783_RS12295 | 2553257..2555317 | + | 2061 | WP_065904503.1 | oligopeptidase B | - |
| LH783_RS12300 | 2555321..2555980 | - | 660 | WP_065904507.1 | exodeoxyribonuclease X | - |
| LH783_RS12305 | 2556059..2556289 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LH783_RS12310 | 2556402..2556776 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| LH783_RS12315 | 2556780..2557649 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| LH783_RS12320 | 2557666..2558004 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2558122..2558269 | - | 148 | - | - | Antitoxin |
| - | 2558163..2558265 | + | 103 | - | - | Toxin |
| LH783_RS12325 | 2558653..2558796 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| LH783_RS12330 | 2558900..2559868 | - | 969 | WP_065904512.1 | VirK/YbjX family protein | - |
| LH783_RS12335 | 2560025..2560678 | + | 654 | WP_004203382.1 | protein-serine/threonine phosphatase | - |
| LH783_RS12340 | 2560675..2560866 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LH783_RS12345 | 2560964..2561203 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LH783_RS12350 | 2561320..2562753 | - | 1434 | WP_017900211.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T220598 NZ_CP085197:2558163-2558265 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT220598 NZ_CP085197:c2558269-2558122 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
