22056

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /Acetyltransf_4(toxin)
Location 3672071..3673482 Replicon chromosome
Accession NC_009439
Organism Pseudomonas mendocina ymp

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag PMEN_RS16765 Protein ID WP_012019410.1
Coordinates 3672913..3673482 (-) Length 190 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag PMEN_RS16760 Protein ID WP_012019409.1
Coordinates 3672071..3672910 (-) Length 280 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PMEN_RS16745 (Pmen_3324) 3668988..3669893 - 906 WP_012019406.1 hypothetical protein -
PMEN_RS16750 (Pmen_3325) 3669895..3670467 - 573 WP_012019407.1 LemA family protein -
PMEN_RS16755 (Pmen_3326) 3670658..3671995 + 1338 WP_012019408.1 peptidase -
PMEN_RS16760 (Pmen_3327) 3672071..3672910 - 840 WP_012019409.1 AraC family transcriptional regulator Antitoxin
PMEN_RS16765 (Pmen_3328) 3672913..3673482 - 570 WP_012019410.1 GNAT family N-acetyltransferase Toxin
PMEN_RS16770 (Pmen_3329) 3673683..3677170 + 3488 Protein_3346 PAS-domain containing protein -
PMEN_RS16775 (Pmen_3330) 3677212..3678066 - 855 WP_085986191.1 MerR family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(14-146)

Antitoxin

DNA binding HTH domain, AraC-type

(197-274)


Sequences

Toxin        


Download         Length: 190 a.a.        Molecular weight: 21347.51 Da        Isoelectric Point: 9.5184

>T22056 WP_012019410.1 NC_009439:c3673482-3672913 [Pseudomonas mendocina ymp]
MFKPQLVTLQRGALRLEPLADADIPALVALAEANRDELLYMSGTQRLDWYRSALAELREQRALPFAIRLGEQLVGTTRFG
DFMNSLPACEIGWTWLDRAQHGSGLNASIKYLMLKHAFDNWGMVRVQLKTAASNLRSQRAIEKLGAAREGLLRNHRRLAD
GRLDDTVLYSITDQEWPQVRAVLEARFGG

Download         Length: 570 bp

>T22056 NC_009439:c3673482-3672913 [Pseudomonas mendocina ymp]
ATGTTCAAACCGCAATTGGTCACGCTGCAGCGAGGAGCCTTGCGCCTGGAGCCACTGGCCGATGCCGATATCCCGGCCCT
GGTCGCGCTGGCCGAGGCCAATCGTGACGAGCTGCTGTACATGAGCGGTACCCAGCGTCTGGACTGGTATCGCAGCGCAC
TGGCCGAACTGCGCGAGCAACGCGCGCTGCCATTCGCCATCCGTCTCGGCGAGCAGCTGGTCGGCACCACTCGCTTCGGC
GATTTCATGAACAGCCTGCCGGCCTGCGAGATCGGCTGGACCTGGCTCGATCGCGCCCAGCATGGCAGCGGGCTGAACGC
CAGCATCAAGTACCTGATGCTCAAGCATGCCTTCGACAACTGGGGCATGGTCCGTGTGCAGCTGAAAACCGCCGCCAGCA
ACCTGCGCTCGCAACGCGCCATCGAGAAGCTGGGCGCCGCCCGCGAGGGCCTGCTGCGTAACCATCGCCGCCTGGCCGAC
GGCCGTCTCGACGACACGGTGCTGTACAGCATCACCGATCAGGAATGGCCGCAGGTGCGCGCCGTCCTGGAAGCGCGCTT
CGGCGGCTGA

Antitoxin


Download         Length: 280 a.a.        Molecular weight: 30970.13 Da        Isoelectric Point: 7.7422

>AT22056 WP_012019409.1 NC_009439:c3672910-3672071 [Pseudomonas mendocina ymp]
MQPLTGSERARFSASDDLHGLELLSARFVEHRFAPHVHDGHVIAVLEAGAERYRYRGVDHLAGAGSIALLNPDEVHTGSK
GVEQGWQYRVFYPQPGTFEALLAELESPPAAPPMFHDSVHHDPLLASRLSALHRLLEDPHSEALQRQTLWREAMLELLQR
YARLPAPRGIGQEPRAVALAKELLASQLSEPPSLEELAAAVNLSPFHFARVFRRATGLPPHAWLRQRRLEQARTLLRSGC
SALSVAMQLGFADQSHLSRQFKQTYGVSPGEYRSAVARG

Download         Length: 840 bp

>AT22056 NC_009439:c3672910-3672071 [Pseudomonas mendocina ymp]
ATGCAGCCACTGACGGGAAGCGAACGCGCGCGGTTCAGCGCCAGCGACGATCTGCACGGGTTGGAGCTGTTGTCCGCACG
CTTTGTCGAACACCGTTTCGCCCCGCACGTGCACGACGGTCATGTGATCGCCGTGCTCGAAGCCGGTGCTGAGCGCTATC
GCTATCGCGGTGTCGATCACCTGGCGGGCGCCGGCAGCATCGCCTTGCTCAATCCGGACGAGGTGCATACCGGTTCCAAA
GGGGTCGAGCAAGGCTGGCAGTACCGGGTGTTCTACCCGCAGCCCGGTACATTCGAGGCGCTGCTGGCCGAACTCGAGTC
GCCACCGGCTGCACCGCCGATGTTCCACGACAGCGTGCACCATGATCCGCTCCTAGCGTCGCGGCTGAGTGCGCTGCACC
GTCTGCTGGAGGATCCGCACAGCGAGGCGCTGCAACGTCAGACCCTGTGGCGCGAGGCGATGCTCGAGCTGCTGCAGCGT
TACGCGCGCCTGCCGGCGCCGCGTGGCATCGGCCAGGAACCGCGGGCGGTGGCGTTGGCCAAGGAGCTGCTTGCCAGTCA
GCTGAGCGAGCCGCCATCGCTGGAAGAGCTGGCGGCAGCGGTCAATCTCTCACCCTTTCACTTCGCCCGGGTGTTCCGCC
GGGCCACCGGTCTGCCACCGCATGCCTGGCTCAGGCAGCGCCGTCTGGAGCAGGCGCGGACGCTGCTTAGAAGCGGCTGT
TCGGCGCTTAGCGTCGCCATGCAGCTGGGGTTCGCCGACCAGAGCCATTTGTCGCGGCAGTTCAAGCAAACCTATGGCGT
CAGTCCCGGCGAATACCGCAGCGCGGTGGCGCGAGGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References