Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2133160..2133431 | Replicon | chromosome |
| Accession | NZ_CP085183 | ||
| Organism | Escherichia coli strain EC7518 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2133290..2133393 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2133160..2133431 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LIN51_RS10390 | 2129715..2130377 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LIN51_RS10395 | 2130401..2131057 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LIN51_RS10400 | 2131159..2131389 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LIN51_RS10405 | 2131528..2131902 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| LIN51_RS10410 | 2131906..2132778 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| LIN51_RS10415 | 2132791..2133132 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2133160..2133431 | - | 272 | - | - | Antitoxin |
| - | 2133290..2133393 | + | 104 | - | - | Toxin |
| LIN51_RS10420 | 2133528..2134184 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| LIN51_RS10425 | 2134185..2134376 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LIN51_RS10430 | 2134481..2134717 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LIN51_RS10435 | 2134835..2136274 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T220538 NZ_CP085183:2133290-2133393 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT220538 NZ_CP085183:c2133431-2133160 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
