Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | hipBA/HipA-HipB |
Location | 1200555..1201224 | Replicon | chromosome |
Accession | NZ_CP085093 | ||
Organism | Aggregatibacter actinomycetemcomitans strain 23S |
Toxin (Protein)
Gene name | hipA | Uniprot ID | - |
Locus tag | LIN99_RS06240 | Protein ID | WP_233119039.1 |
Coordinates | 1200555..1200893 (-) | Length | 113 a.a. |
Antitoxin (Protein)
Gene name | hipB | Uniprot ID | - |
Locus tag | LIN99_RS06245 | Protein ID | WP_014167717.1 |
Coordinates | 1200943..1201224 (-) | Length | 94 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LIN99_RS06210 | 1195990..1196418 | + | 429 | WP_019518326.1 | DUF2726 domain-containing protein | - |
LIN99_RS06215 | 1196502..1199366 | + | 2865 | WP_233119040.1 | valine--tRNA ligase | - |
LIN99_RS06220 | 1199433..1200014 | + | 582 | WP_249850124.1 | hypothetical protein | - |
LIN99_RS06225 | 1200027..1200326 | + | 300 | WP_249850125.1 | hypothetical protein | - |
LIN99_RS06230 | 1200323..1200445 | - | 123 | WP_005573281.1 | hypothetical protein | - |
LIN99_RS06235 | 1200445..1200561 | - | 117 | WP_005545808.1 | hypothetical protein | - |
LIN99_RS06240 | 1200555..1200893 | - | 339 | WP_233119039.1 | HipA N-terminal domain-containing protein | Toxin |
LIN99_RS06245 | 1200943..1201224 | - | 282 | WP_014167717.1 | helix-turn-helix domain-containing protein | Antitoxin |
LIN99_RS06250 | 1201368..1202885 | - | 1518 | WP_005545812.1 | DHA2 family efflux MFS transporter permease subunit | - |
LIN99_RS06255 | 1202895..1204055 | - | 1161 | WP_005545814.1 | EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit | - |
LIN99_RS06260 | 1204264..1204746 | + | 483 | WP_005544145.1 | Dps family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 113 a.a. Molecular weight: 13134.88 Da Isoelectric Point: 8.6930
>T220475 WP_233119039.1 NZ_CP085093:c1200893-1200555 [Aggregatibacter actinomycetemcomitans]
MAKAHKWPTEFQYPPKWLDSARSRPISLSLPLSHKVYREDSVYNFFDNLLPDNEQIRSRIQQRFQTSTKSPFDLLSAIEQ
DCVGAIQLYHGESRSVRQIYTEPLNDKKCKTC
MAKAHKWPTEFQYPPKWLDSARSRPISLSLPLSHKVYREDSVYNFFDNLLPDNEQIRSRIQQRFQTSTKSPFDLLSAIEQ
DCVGAIQLYHGESRSVRQIYTEPLNDKKCKTC
Download Length: 339 bp
>T220475 NZ_CP117049:726960-727256 [Escherichia coli]
ATGGAAAAACGCACACCACATACACGTTTGAGTCAGGTTAAAAAACTTGTCAATGCCGGGCAAGTTCGTACAACACGTAG
TGCCCTGTTAAATGCAGATGAGTTAGGTTTGGATTTTGATGGTATGTGTAATGTTATCATTGGATTATCAGAGAGCGACT
TTTATAAAAGCATGACCACCTACTCTGATCATACTATCTGGCAGGATGTTTACAGACCCAGGCTTGTTACAGGCCAGGTT
TATCTTAAAATTACGGTAATTCATGACGTACTGATCGTCTCGTTTAAGGAGAAGTAA
ATGGAAAAACGCACACCACATACACGTTTGAGTCAGGTTAAAAAACTTGTCAATGCCGGGCAAGTTCGTACAACACGTAG
TGCCCTGTTAAATGCAGATGAGTTAGGTTTGGATTTTGATGGTATGTGTAATGTTATCATTGGATTATCAGAGAGCGACT
TTTATAAAAGCATGACCACCTACTCTGATCATACTATCTGGCAGGATGTTTACAGACCCAGGCTTGTTACAGGCCAGGTT
TATCTTAAAATTACGGTAATTCATGACGTACTGATCGTCTCGTTTAAGGAGAAGTAA
Antitoxin
Download Length: 94 a.a. Molecular weight: 10508.00 Da Isoelectric Point: 4.8356
>AT220475 WP_014167717.1 NZ_CP085093:c1201224-1200943 [Aggregatibacter actinomycetemcomitans]
MVITTAKMLSHVIREFRYQGNLSQTDVAKLASTTQARISVFENEPERTKLETLFKILAGLELELIVQPRKKSAVTENLIS
EPTPAFSDDDEAW
MVITTAKMLSHVIREFRYQGNLSQTDVAKLASTTQARISVFENEPERTKLETLFKILAGLELELIVQPRKKSAVTENLIS
EPTPAFSDDDEAW
Download Length: 282 bp
>AT220475 NZ_CP117049:727258-727653 [Escherichia coli]
ATGAAATGTCCGGTTTGCCACCAGGGAGAAATGGTTTCTGGCATTAAAGATATTCCATACACCTTCCGTGGACGAAAAAC
AGTATTGAAAGGTATCCACGGTTTATATTGTGTCCATTGCGAAGAGAGCATCATGAATAAAGAAGAGTCAGATGCTTTCA
TGGCGCAAGTAAAGGCATTTCGGGCTTCGGTGAATGCCGAAACAGTGGCACCTGAATTTATAGTGAAGGTTCGAAAAAAG
CTCTCTCTTACCCAAAAAGAGGCAAGCGAAATTTTTGGGGGAGGTGTAAATGCGTTTTCGCGTTACGAAAAAGGCAATGC
CCAACCTCATCCTTCCACAATCAAACTTTTACGTGTTCTGGATAAGCATCCAGAACTATTGAATGAAATCCGTTAA
ATGAAATGTCCGGTTTGCCACCAGGGAGAAATGGTTTCTGGCATTAAAGATATTCCATACACCTTCCGTGGACGAAAAAC
AGTATTGAAAGGTATCCACGGTTTATATTGTGTCCATTGCGAAGAGAGCATCATGAATAAAGAAGAGTCAGATGCTTTCA
TGGCGCAAGTAAAGGCATTTCGGGCTTCGGTGAATGCCGAAACAGTGGCACCTGAATTTATAGTGAAGGTTCGAAAAAAG
CTCTCTCTTACCCAAAAAGAGGCAAGCGAAATTTTTGGGGGAGGTGTAAATGCGTTTTCGCGTTACGAAAAAGGCAATGC
CCAACCTCATCCTTCCACAATCAAACTTTTACGTGTTCTGGATAAGCATCCAGAACTATTGAATGAAATCCGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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