Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2601612..2601787 | Replicon | chromosome |
| Accession | NC_009436 | ||
| Organism | Enterobacter sp. 638 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2601617..2601707 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2601612..2601787 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ENT638_RS12400 | 2597620..2599062 | + | 1443 | WP_015959407.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ENT638_RS12405 | 2599167..2599406 | + | 240 | WP_015959408.1 | YebV family protein | - |
| ENT638_RS12410 | 2599511..2599702 | + | 192 | WP_015959409.1 | YebW family protein | - |
| ENT638_RS12415 | 2599703..2600347 | - | 645 | WP_015959410.1 | protein-serine/threonine phosphatase | - |
| ENT638_RS12420 | 2600515..2601456 | + | 942 | WP_015959411.1 | VirK/YbjX family protein | - |
| - | 2601612..2601787 | + | 176 | - | - | Antitoxin |
| - | 2601617..2601707 | - | 91 | - | - | Toxin |
| ENT638_RS12425 | 2601862..2602200 | - | 339 | WP_015959412.1 | YebY family protein | - |
| ENT638_RS12430 | 2602215..2603087 | - | 873 | WP_015959413.1 | copper homeostasis membrane protein CopD | - |
| ENT638_RS12435 | 2603089..2603463 | - | 375 | WP_015959414.1 | CopC domain-containing protein YobA | - |
| ENT638_RS12440 | 2603601..2603831 | + | 231 | WP_015959415.1 | DNA polymerase III subunit theta | - |
| ENT638_RS12445 | 2603942..2604598 | + | 657 | WP_015959416.1 | carbon-nitrogen hydrolase family protein | - |
| ENT638_RS12450 | 2604623..2605285 | + | 663 | WP_015959417.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 91 bp
>T22044 NC_009436:c2601707-2601617 [Enterobacter sp. 638]
AGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTATTC
GGTCTCTTTTT
AGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTATTC
GGTCTCTTTTT
Antitoxin
Download Length: 176 bp
>AT22044 NC_009436:2601612-2601787 [Enterobacter sp. 638]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAACTACGCCTGACACTCTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACTAAAGTGG
TCAGAAAAAAAGCGTG
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAACTACGCCTGACACTCTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACTAAAGTGG
TCAGAAAAAAAGCGTG
