Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2956653..2956804 | Replicon | chromosome |
| Accession | NZ_CP085080 | ||
| Organism | Enterobacter cloacae strain ECl_1.VN | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2956666..2956769 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2956653..2956804 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH408_RS13895 (LH408_13895) | 2952928..2954370 | + | 1443 | WP_094915471.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LH408_RS13900 (LH408_13900) | 2954476..2954715 | + | 240 | WP_013096113.1 | YebV family protein | - |
| LH408_RS13905 (LH408_13905) | 2954749..2955394 | - | 646 | Protein_2722 | protein-serine/threonine phosphatase | - |
| LH408_RS13910 (LH408_13910) | 2955561..2956502 | + | 942 | WP_038419912.1 | VirK/YbjX family protein | - |
| - | 2956653..2956804 | + | 152 | - | - | Antitoxin |
| - | 2956666..2956769 | - | 104 | - | - | Toxin |
| LH408_RS13915 (LH408_13915) | 2956909..2957247 | - | 339 | WP_128310471.1 | YebY family protein | - |
| LH408_RS13920 (LH408_13920) | 2957264..2958133 | - | 870 | WP_226834718.1 | copper homeostasis membrane protein CopD | - |
| LH408_RS13925 (LH408_13925) | 2958135..2958506 | - | 372 | WP_013096103.1 | CopC domain-containing protein YobA | - |
| LH408_RS13930 (LH408_13930) | 2958644..2958874 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| LH408_RS13935 (LH408_13935) | 2958984..2959634 | + | 651 | WP_226834719.1 | carbon-nitrogen hydrolase family protein | - |
| LH408_RS13940 (LH408_13940) | 2959658..2960320 | + | 663 | WP_020690817.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2947553..2978908 | 31355 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T220397 NZ_CP085080:c2956769-2956666 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT220397 NZ_CP085080:2956653-2956804 [Enterobacter cloacae]
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
