Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 836548..837380 | Replicon | chromosome |
| Accession | NZ_CP085074 | ||
| Organism | Escherichia coli strain P21_SE1_04.20 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | A7ZVJ9 |
| Locus tag | LH372_RS04030 | Protein ID | WP_000854765.1 |
| Coordinates | 836548..836922 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | S1NM52 |
| Locus tag | LH372_RS04035 | Protein ID | WP_001295723.1 |
| Coordinates | 837012..837380 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH372_RS03995 (831626) | 831626..832225 | + | 600 | WP_001255034.1 | type II secretion system minor pseudopilin GspJ | - |
| LH372_RS04000 (832228) | 832228..833205 | + | 978 | WP_000633209.1 | type II secretion system minor pseudopilin GspK | - |
| LH372_RS04005 (833202) | 833202..834380 | + | 1179 | WP_000094991.1 | type II secretion system protein GspL | - |
| LH372_RS04010 (834382) | 834382..834918 | + | 537 | WP_000942785.1 | GspM family type II secretion system protein YghD | - |
| LH372_RS04015 (835199) | 835199..836041 | - | 843 | WP_022645115.1 | DUF4942 domain-containing protein | - |
| LH372_RS04020 (836126) | 836126..836320 | - | 195 | WP_024181941.1 | DUF957 domain-containing protein | - |
| LH372_RS04025 (836345) | 836345..836548 | - | 204 | WP_001398797.1 | DUF5983 family protein | - |
| LH372_RS04030 (836548) | 836548..836922 | - | 375 | WP_000854765.1 | TA system toxin CbtA family protein | Toxin |
| LH372_RS04035 (837012) | 837012..837380 | - | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| LH372_RS04040 (837543) | 837543..837764 | - | 222 | WP_000692341.1 | DUF987 domain-containing protein | - |
| LH372_RS04045 (837827) | 837827..838303 | - | 477 | WP_001186774.1 | RadC family protein | - |
| LH372_RS04050 (838319) | 838319..838798 | - | 480 | WP_057109541.1 | antirestriction protein | - |
| LH372_RS04055 (839064) | 839064..839882 | - | 819 | WP_001175165.1 | DUF932 domain-containing protein | - |
| LH372_RS04060 (839972) | 839972..840205 | - | 234 | WP_001278293.1 | DUF905 family protein | - |
| LH372_RS04065 (840211) | 840211..840888 | - | 678 | WP_001097302.1 | hypothetical protein | - |
| LH372_RS04070 (841036) | 841036..841716 | - | 681 | WP_001282921.1 | WYL domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13970.98 Da Isoelectric Point: 7.2909
>T220359 WP_000854765.1 NZ_CP085074:c836922-836548 [Escherichia coli]
MKTLPDTHVREVSCCPSPVTIWQTLLTRLLDQHYSLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRHNYRTVNNITLGKYPEAK
MKTLPDTHVREVSCCPSPVTIWQTLLTRLLDQHYSLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGASSQLINSIDILRARRATGLMTRHNYRTVNNITLGKYPEAK
Download Length: 375 bp
>T220359 NZ_CP117009:50139-50519 [Escherichia coli]
ATGAGGCATATATCACCGGAAGAACTTATTGCGCTTCATGATGCGAATATAAACCGCTACGGCGGCCTGCCGGGAATGTC
TGATCCGGGCAGGGCAGAGGCCATTATCGGGAGAGTTCAGGCCAGAGTTGCCTACGAAGAGATCACCGACCTTTTCGAAG
TCTCCGCCACCTACCTGGTGGCTACAGCGAGAGGGCATATATTCAATGATGCCAATAAGCGTACCGCGCTAAACAGTGCG
CTGTTATTTCTACGCCGTAACGGGGTGCAGGTATTTGATTCACCTGAACTGGCAGACCTTACCGTAGGGGCTGCGACCGG
AGAGATATCTGTATCTTCTGTCGCCGACACGTTACGTAGATTGTATGGTTCTGCGGAGTAG
ATGAGGCATATATCACCGGAAGAACTTATTGCGCTTCATGATGCGAATATAAACCGCTACGGCGGCCTGCCGGGAATGTC
TGATCCGGGCAGGGCAGAGGCCATTATCGGGAGAGTTCAGGCCAGAGTTGCCTACGAAGAGATCACCGACCTTTTCGAAG
TCTCCGCCACCTACCTGGTGGCTACAGCGAGAGGGCATATATTCAATGATGCCAATAAGCGTACCGCGCTAAACAGTGCG
CTGTTATTTCTACGCCGTAACGGGGTGCAGGTATTTGATTCACCTGAACTGGCAGACCTTACCGTAGGGGCTGCGACCGG
AGAGATATCTGTATCTTCTGTCGCCGACACGTTACGTAGATTGTATGGTTCTGCGGAGTAG
Antitoxin
Download Length: 123 a.a. Molecular weight: 13592.40 Da Isoelectric Point: 6.6255
>AT220359 WP_001295723.1 NZ_CP085074:c837380-837012 [Escherichia coli]
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
Download Length: 369 bp
>AT220359 NZ_CP117009:49918-50139 [Escherichia coli]
ATGCAATCCATTAACTTCCGTACCGCGCGCGGCAACCTTTCTGAAGTGCTCAACAATGTTGAGGCCGGGGAAGAGGTTGA
AATCACCCGCAGAGGCCGTGAGCCAGCAGTAATTGTCAGCAAGGCTACTTTCGAAGCCTACAAAAAAGCGGCGCTGGATG
CTGAATTTGCATCCCTGTTTGACACCCTGGACTCCACCAACAAGGAACTGGTTAACCGATAA
ATGCAATCCATTAACTTCCGTACCGCGCGCGGCAACCTTTCTGAAGTGCTCAACAATGTTGAGGCCGGGGAAGAGGTTGA
AATCACCCGCAGAGGCCGTGAGCCAGCAGTAATTGTCAGCAAGGCTACTTTCGAAGCCTACAAAAAAGCGGCGCTGGATG
CTGAATTTGCATCCCTGTTTGACACCCTGGACTCCACCAACAAGGAACTGGTTAACCGATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|