Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2095944..2096215 | Replicon | chromosome |
| Accession | NZ_CP085069 | ||
| Organism | Escherichia coli strain P27_L1_05.20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2096074..2096177 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2095944..2096215 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH371_RS10135 | 2092499..2093161 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LH371_RS10140 | 2093185..2093841 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LH371_RS10145 | 2093943..2094173 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LH371_RS10150 | 2094312..2094686 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| LH371_RS10155 | 2094690..2095562 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| LH371_RS10160 | 2095575..2095916 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2095944..2096215 | - | 272 | - | - | Antitoxin |
| - | 2096074..2096177 | + | 104 | - | - | Toxin |
| LH371_RS10165 | 2096312..2096968 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| LH371_RS10170 | 2096969..2097160 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LH371_RS10175 | 2097265..2097501 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LH371_RS10180 | 2097619..2099058 | - | 1440 | WP_106474676.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T220333 NZ_CP085069:2096074-2096177 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT220333 NZ_CP085069:c2096215-2095944 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
