Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2604270..2604541 | Replicon | chromosome |
| Accession | NZ_CP085060 | ||
| Organism | Escherichia coli strain P30_L1_05.20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2604308..2604411 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2604270..2604541 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH369_RS12545 | 2601427..2602866 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LH369_RS12550 | 2602984..2603220 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LH369_RS12555 | 2603325..2603516 | + | 192 | WP_000457842.1 | YebW family protein | - |
| LH369_RS12560 | 2603517..2604173 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2604270..2604541 | + | 272 | - | - | Antitoxin |
| - | 2604308..2604411 | - | 104 | - | - | Toxin |
| LH369_RS12565 | 2604569..2604910 | - | 342 | WP_000976476.1 | YebY family protein | - |
| LH369_RS12570 | 2604923..2605795 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| LH369_RS12575 | 2605799..2606173 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LH369_RS12580 | 2606312..2606542 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LH369_RS12585 | 2606644..2607300 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LH369_RS12590 | 2607324..2607986 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T220264 NZ_CP085060:c2604411-2604308 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT220264 NZ_CP085060:2604270-2604541 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
