Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1502772..1502866 Replicon chromosome
Accession NC_009381
Organism Yersinia pestis Pestoides F

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1502773..1502866 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1502772..1502866 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
YPDSF_RS07030 1497965..1500043 - 2079 WP_011906249.1 flagellar biosynthesis protein FlhA -
YPDSF_RS07035 1500043..1501203 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
YPDSF_RS07040 1501735..1502193 + 459 WP_002211098.1 hypothetical protein -
YPDSF_RS07045 1502187..1502513 + 327 WP_002211097.1 DUF1493 family protein -
- 1502772..1502866 + 95 - - Antitoxin
- 1502773..1502866 - 94 - - Toxin
YPDSF_RS07055 1503036..1503377 - 342 WP_002211095.1 YebY family protein -
YPDSF_RS07060 1503474..1504358 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
YPDSF_RS07065 1504361..1504747 - 387 WP_002211093.1 CopC domain-containing protein YobA -
YPDSF_RS07070 1505153..1505662 - 510 WP_002211092.1 non-heme ferritin -
YPDSF_RS07075 1506063..1506293 + 231 WP_002211091.1 DNA polymerase III subunit theta -
YPDSF_RS07080 1506353..1507303 - 951 WP_002211090.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T22024 NC_009381:c1502866-1502773 [Yersinia pestis Pestoides F]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT22024 NC_009381:1502772-1502866 [Yersinia pestis Pestoides F]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References