Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2070759..2071030 | Replicon | chromosome |
| Accession | NZ_CP085056 | ||
| Organism | Escherichia coli strain P24_WM1_05.20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2070889..2070992 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2070759..2071030 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LHK10_RS09990 | 2067314..2067976 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LHK10_RS09995 | 2068000..2068656 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LHK10_RS10000 | 2068758..2068988 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LHK10_RS10005 | 2069127..2069501 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| LHK10_RS10010 | 2069505..2070377 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| LHK10_RS10015 | 2070390..2070731 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2070759..2071030 | - | 272 | - | - | Antitoxin |
| - | 2070889..2070992 | + | 104 | - | - | Toxin |
| LHK10_RS10020 | 2071127..2071783 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LHK10_RS10025 | 2071784..2071975 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LHK10_RS10030 | 2072080..2072316 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LHK10_RS10035 | 2072434..2073873 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T220235 NZ_CP085056:2070889-2070992 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT220235 NZ_CP085056:c2071030-2070759 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
