Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1980373..1980518 | Replicon | chromosome |
| Accession | NZ_CP084986 | ||
| Organism | Klebsiella pneumoniae strain KP18-2110-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1980409..1980511 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1980373..1980518 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH404_RS09680 | 1975503..1977563 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LH404_RS09685 | 1977567..1978226 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| LH404_RS09690 | 1978305..1978535 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LH404_RS09695 | 1978648..1979022 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LH404_RS09700 | 1979026..1979895 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| LH404_RS09705 | 1979912..1980250 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1980373..1980518 | - | 146 | - | - | Antitoxin |
| - | 1980409..1980511 | + | 103 | - | - | Toxin |
| LH404_RS09710 | 1980886..1981029 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LH404_RS09715 | 1981134..1982102 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LH404_RS09720 | 1982259..1982912 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| LH404_RS09725 | 1982909..1983100 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LH404_RS09730 | 1983198..1983437 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LH404_RS09735 | 1983553..1984986 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T220201 NZ_CP084986:1980409-1980511 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT220201 NZ_CP084986:c1980518-1980373 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
