Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2012672..2012943 | Replicon | chromosome |
| Accession | NZ_CP084900 | ||
| Organism | Escherichia coli strain EC20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2012802..2012905 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2012672..2012943 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LHL15_RS09695 | 2009227..2009889 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LHL15_RS09700 | 2009913..2010569 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LHL15_RS09705 | 2010671..2010901 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LHL15_RS09710 | 2011040..2011414 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LHL15_RS09715 | 2011418..2012290 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| LHL15_RS09720 | 2012303..2012644 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2012672..2012943 | - | 272 | - | - | Antitoxin |
| - | 2012802..2012905 | + | 104 | - | - | Toxin |
| LHL15_RS09725 | 2013040..2013696 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| LHL15_RS09730 | 2013697..2013888 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LHL15_RS09735 | 2013993..2014229 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LHL15_RS09740 | 2014347..2015786 | - | 1440 | WP_061344305.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T220119 NZ_CP084900:2012802-2012905 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT220119 NZ_CP084900:c2012943-2012672 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
