Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1903216..1903363 | Replicon | chromosome |
| Accession | NZ_CP084876 | ||
| Organism | Klebsiella quasipneumoniae subsp. quasipneumoniae strain 01A030T | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1903257..1903359 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1903216..1903363 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM20_RS09195 | 1898351..1900411 | + | 2061 | WP_044523975.1 | oligopeptidase B | - |
| LGM20_RS09200 | 1900415..1901074 | - | 660 | WP_023290237.1 | exodeoxyribonuclease X | - |
| LGM20_RS09205 | 1901153..1901383 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM20_RS09210 | 1901496..1901870 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| LGM20_RS09215 | 1901874..1902743 | + | 870 | WP_044523974.1 | copper homeostasis membrane protein CopD | - |
| LGM20_RS09220 | 1902760..1903098 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1903216..1903363 | - | 148 | - | - | Antitoxin |
| - | 1903257..1903359 | + | 103 | - | - | Toxin |
| LGM20_RS09225 | 1903738..1903881 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| LGM20_RS09230 | 1903982..1904950 | - | 969 | WP_072413392.1 | VirK/YbjX family protein | - |
| LGM20_RS09235 | 1905107..1905760 | + | 654 | WP_044523971.1 | protein-serine/threonine phosphatase | - |
| LGM20_RS09240 | 1905757..1905948 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LGM20_RS09245 | 1906046..1906285 | - | 240 | WP_044523970.1 | YebV family protein | - |
| LGM20_RS09250 | 1906401..1907831 | - | 1431 | WP_044523969.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219748 NZ_CP084876:1903257-1903359 [Klebsiella quasipneumoniae subsp. quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT219748 NZ_CP084876:c1903363-1903216 [Klebsiella quasipneumoniae subsp. quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
