Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1885056..1885196 | Replicon | chromosome |
| Accession | NZ_CP084874 | ||
| Organism | Klebsiella africana strain 200023 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1885092..1885194 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1885056..1885196 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGL98_RS09095 (LGL98_09095) | 1880187..1882247 | + | 2061 | WP_136030185.1 | oligopeptidase B | - |
| LGL98_RS09100 (LGL98_09100) | 1882251..1882910 | - | 660 | WP_136030187.1 | exodeoxyribonuclease X | - |
| LGL98_RS09105 (LGL98_09105) | 1882989..1883219 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGL98_RS09110 (LGL98_09110) | 1883333..1883707 | + | 375 | WP_136030189.1 | CopC domain-containing protein YobA | - |
| LGL98_RS09115 (LGL98_09115) | 1883709..1884578 | + | 870 | WP_136030191.1 | copper homeostasis membrane protein CopD | - |
| LGL98_RS09120 (LGL98_09120) | 1884595..1884933 | + | 339 | WP_168435238.1 | YebY family protein | - |
| - | 1885056..1885196 | - | 141 | - | - | Antitoxin |
| - | 1885092..1885194 | + | 103 | - | - | Toxin |
| LGL98_RS09125 (LGL98_09125) | 1885563..1886525 | - | 963 | WP_136030193.1 | glycosyltransferase family 2 protein | - |
| LGL98_RS09130 (LGL98_09130) | 1886800..1887933 | - | 1134 | Protein_1778 | IS3 family transposase | - |
| LGL98_RS09135 (LGL98_09135) | 1888153..1888296 | - | 144 | WP_168435244.1 | Ecr family regulatory small membrane protein | - |
| LGL98_RS09140 (LGL98_09140) | 1888401..1889369 | - | 969 | WP_168435239.1 | VirK/YbjX family protein | - |
| LGL98_RS09145 (LGL98_09145) | 1889526..1890179 | + | 654 | WP_136030196.1 | protein-serine/threonine phosphatase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1866318..1900859 | 34541 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219732 NZ_CP084874:1885092-1885194 [Klebsiella africana]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT219732 NZ_CP084874:c1885196-1885056 [Klebsiella africana]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
