Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3686830..3686975 | Replicon | chromosome |
| Accession | NZ_CP084870 | ||
| Organism | Klebsiella pneumoniae strain BJ1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3686837..3686939 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3686830..3686975 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM01_RS17705 | 3682362..3683795 | + | 1434 | WP_032446224.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LGM01_RS17710 | 3683911..3684150 | + | 240 | WP_002911393.1 | YebV family protein | - |
| LGM01_RS17715 | 3684248..3684439 | + | 192 | WP_002911395.1 | YebW family protein | - |
| LGM01_RS17720 | 3684436..3685089 | - | 654 | WP_032446225.1 | protein-serine/threonine phosphatase | - |
| LGM01_RS17725 | 3685246..3686214 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LGM01_RS17730 | 3686319..3686462 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3686830..3686975 | + | 146 | - | - | Antitoxin |
| - | 3686837..3686939 | - | 103 | - | - | Toxin |
| LGM01_RS17735 | 3687098..3687436 | - | 339 | WP_002911404.1 | YebY family protein | - |
| LGM01_RS17740 | 3687453..3688322 | - | 870 | WP_032446226.1 | copper homeostasis membrane protein CopD | - |
| LGM01_RS17745 | 3688326..3688700 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LGM01_RS17750 | 3688813..3689043 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM01_RS17755 | 3689122..3689781 | + | 660 | WP_032446227.1 | exodeoxyribonuclease X | - |
| LGM01_RS17760 | 3689785..3691845 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219682 NZ_CP084870:c3686939-3686837 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT219682 NZ_CP084870:3686830-3686975 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
