Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3637804..3637949 | Replicon | chromosome |
| Accession | NZ_CP084868 | ||
| Organism | Klebsiella pneumoniae strain SA1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3637811..3637913 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3637804..3637949 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM08_RS17485 | 3633337..3634770 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LGM08_RS17490 | 3634886..3635125 | + | 240 | WP_002911393.1 | YebV family protein | - |
| LGM08_RS17495 | 3635223..3635414 | + | 192 | WP_002911395.1 | YebW family protein | - |
| LGM08_RS17500 | 3635411..3636064 | - | 654 | WP_004189273.1 | protein-serine/threonine phosphatase | - |
| LGM08_RS17505 | 3636221..3637189 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LGM08_RS17510 | 3637294..3637437 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3637804..3637949 | + | 146 | - | - | Antitoxin |
| - | 3637811..3637913 | - | 103 | - | - | Toxin |
| LGM08_RS17515 | 3638072..3638410 | - | 339 | WP_002911404.1 | YebY family protein | - |
| LGM08_RS17520 | 3638427..3639296 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LGM08_RS17525 | 3639300..3639674 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LGM08_RS17530 | 3639787..3640017 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM08_RS17535 | 3640096..3640755 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LGM08_RS17540 | 3640759..3642819 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219660 NZ_CP084868:c3637913-3637811 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT219660 NZ_CP084868:3637804-3637949 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
